JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDZD2_chr5_31634131_32115932	0/0	t0023	3465	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0024	3461	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0025	3469	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0026	3468	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0027	3465	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0028	3461	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0029	3468	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0030	3464	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0031	3461	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0032	3465	1	0	0	0	0	1	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0033	3465	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0034	3461	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0035	3461	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0036	3461	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0037	3465	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0038	3469	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0039	3465	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0040	3465	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0041	3461	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0042	3465	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0043	3461	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0044	3465	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0045	3468	1	0	0	1	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0046	3465	1	0	1	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0047	3461	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0048	3461	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD2_chr5_31634131_32115932	0/0	t0049	3465	1	1	0	0	0	0	copy fasta	PDZD2	chr5	31634131	32115932
PDZD4_chrX_153797166_153835544	1/0	t0001	1434	162	57	24	60	2	18	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/1	t0002	1431	46	1	14	18	5	7	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0003	1434	45	11	8	21	2	3	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0004	1436	6	2	1	2	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0005	1434	4	3	1	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0006	1433	2	0	1	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0007	1434	2	2	0	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0008	1436	2	0	0	2	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0009	1435	1	0	0	0	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0010	1442	1	1	0	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0011	1437	1	1	0	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0012	1436	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0013	1433	1	0	0	0	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0014	1434	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0015	1435	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0016	1433	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0017	1431	1	0	0	0	0	1	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0018	1435	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0019	1438	1	0	0	1	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD4_chrX_153797166_153835544	0/0	t0020	1434	1	0	1	0	0	0	copy fasta	PDZD4	chrX	153797166	153835544
PDZD7_chr10_101002679_101036129	1/0	t0001	1011	115	32	26	29	12	15	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0002	1014	79	14	16	36	1	12	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0003	1012	78	9	15	47	2	5	copy fasta	PDZD7	chr10	101002679	101036129