JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDZD7_chr10_101002679_101036129	0/0	t0004	1013	77	11	17	38	3	8	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/1	t0005	1015	47	13	3	22	0	8	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0006	1012	5	5	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0007	1014	4	0	0	4	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0008	1014	3	0	2	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0009	1013	3	1	0	2	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0010	1013	3	3	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0011	1010	3	2	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0012	1015	2	0	1	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0013	1011	2	2	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0014	1011	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0015	1011	1	0	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0016	1011	1	0	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0017	1012	1	0	0	0	0	1	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0018	1015	1	0	0	1	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0019	1011	1	0	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0020	1012	1	0	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0021	1011	1	0	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0022	1015	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0023	1012	1	0	1	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD7_chr10_101002679_101036129	0/0	t0024	1011	1	1	0	0	0	0	copy fasta	PDZD7	chr10	101002679	101036129
PDZD8_chr10_117272274_117380440	0/0	t0001	6182	92	21	21	38	4	8	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0002	6197	34	7	2	20	0	5	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/1	t0003	6195	29	11	7	4	1	5	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0004	6196	21	2	4	15	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0005	6190	14	0	2	12	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0006	6193	9	0	2	6	0	1	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0007	6196	9	2	5	0	2	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0008	6198	7	0	1	5	0	1	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0009	6198	6	4	2	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0010	6183	6	0	0	6	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0011	6191	5	0	1	4	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0012	6200	5	1	3	0	0	1	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0013	6208	5	0	0	5	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0014	6193	4	4	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0015	6208	4	4	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0016	6199	4	4	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0017	6195	4	4	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0018	6197	4	4	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0019	6197	3	0	0	3	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0020	6195	3	3	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0021	6197	2	2	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0022	6194	2	0	0	0	0	2	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0023	6199	2	0	0	2	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0024	6196	2	0	0	2	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0025	6182	2	0	2	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0026	6194	2	1	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0027	6197	2	1	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0028	6197	1	0	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0029	6199	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440