JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDZD8_chr10_117272274_117380440	0/0	t0030	6200	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0031	6198	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0032	6198	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0033	6197	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0034	6197	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0035	6195	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0036	6192	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0037	6197	1	0	0	0	0	1	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0038	6197	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0039	6198	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0040	6192	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0041	6195	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0042	6196	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0043	6198	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0044	6199	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0045	6193	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0046	6197	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0047	6190	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0048	6197	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0049	6190	1	0	0	0	0	1	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0050	6196	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0051	6200	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0052	6182	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0053	6182	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0054	6182	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0055	6182	1	0	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0056	6168	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0057	6182	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0058	6182	1	0	1	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0059	6195	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0060	6197	1	0	0	0	0	1	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0061	6200	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0062	6200	1	0	0	0	1	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0063	6182	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0064	6168	1	0	0	1	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	1/0	t0065	6208	1	0	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0066	6191	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD8_chr10_117272274_117380440	0/0	t0067	6192	1	1	0	0	0	0	copy fasta	PDZD8	chr10	117272274	117380440
PDZD9_chr16_21978865_22006116	1/1	t0001	472	360	83	49	178	12	36	copy fasta	PDZD9	chr16	21978865	22006116
PDZD9_chr16_21978865_22006116	0/0	t0002	472	5	5	0	0	0	0	copy fasta	PDZD9	chr16	21978865	22006116
PDZD9_chr16_21978865_22006116	0/0	t0003	472	1	0	1	0	0	0	copy fasta	PDZD9	chr16	21978865	22006116
PDZK1IP1_chr1_47178582_47195036	1/1	t0001	494	406	79	82	181	16	46	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1IP1_chr1_47178582_47195036	0/0	t0002	494	10	1	0	9	0	0	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1IP1_chr1_47178582_47195036	0/0	t0003	494	5	5	0	0	0	0	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1IP1_chr1_47178582_47195036	0/0	t0004	494	5	5	0	0	0	0	copy fasta	PDZK1IP1	chr1	47178582	47195036
PDZK1_chr1_145665985_145712368	1/1	t0001	506	304	68	54	128	14	38	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	t0002	506	12	12	0	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	t0003	506	3	2	1	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	t0004	506	1	0	0	1	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZK1_chr1_145665985_145712368	0/0	t0005	506	1	0	0	1	0	0	copy fasta	PDZK1	chr1	145665985	145712368