JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDZK1_chr1_145665985_145712368	0/0	t0006	506	1	0	1	0	0	0	copy fasta	PDZK1	chr1	145665985	145712368
PDZRN3_chr3_73377431_73629941	0/1	t0001	1051	109	34	30	32	4	8	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	1/0	t0002	1051	91	40	16	18	2	14	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	t0003	1051	7	7	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	t0004	1054	3	3	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	t0005	1051	2	0	0	2	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	t0006	1050	2	2	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	t0007	1051	1	1	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN3_chr3_73377431_73629941	0/0	t0008	1051	1	1	0	0	0	0	copy fasta	PDZRN3	chr3	73377431	73629941
PDZRN4_chr12_41183320_41579745	0/0	t0001	992	145	60	17	52	4	12	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	t0002	992	38	6	9	13	2	8	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	t0003	990	17	0	0	17	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	t0004	992	2	2	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	t0005	990	2	0	0	2	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	t0006	992	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PDZRN4_chr12_41183320_41579745	0/0	t0007	992	1	1	0	0	0	0	copy fasta	PDZRN4	chr12	41183320	41579745
PEA15_chr1_160200384_160220372	1/1	t0001	2028	151	26	32	76	5	10	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0002	2031	146	11	38	67	6	24	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0003	2028	33	33	0	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0004	2022	10	0	0	10	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0005	2024	6	6	0	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0006	2027	5	5	0	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0007	2021	4	3	1	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0008	2031	3	3	0	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0009	2028	3	0	2	0	0	1	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0010	2028	2	0	2	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0011	2031	2	2	0	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0012	2031	1	0	0	1	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0013	2031	1	0	0	0	0	1	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0014	2028	1	0	0	1	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0015	2028	1	0	0	1	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0016	2005	1	0	1	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0017	2028	1	1	0	0	0	0	copy fasta	PEA15	chr1	160200384	160220372
PEA15_chr1_160200384_160220372	0/0	t0018	2028	1	0	0	0	1	0	copy fasta	PEA15	chr1	160200384	160220372
PEAK1_chr15_77103158_77425104	0/0	t0001	6759	58	11	9	32	1	5	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0002	6755	42	3	9	24	1	5	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0003	6759	37	2	15	16	0	4	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0004	6763	32	0	4	24	0	4	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0005	6757	23	7	2	9	2	3	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0006	6755	10	4	1	1	1	3	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0007	6759	8	8	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0008	6759	7	0	3	4	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0009	6757	6	0	4	0	2	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0010	6753	5	5	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0011	6755	5	0	0	5	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/1	t0012	6756	5	0	2	0	2	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0013	6755	5	1	2	0	0	2	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0014	6751	4	0	0	3	1	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0015	6757	4	3	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0016	6761	4	1	1	2	0	0	copy fasta	PEAK1	chr15	77103158	77425104