JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEAK1_chr15_77103158_77425104	0/0	t0017	6753	3	3	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0018	6757	3	0	3	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0019	6765	3	0	1	2	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0020	6762	3	3	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0021	6753	2	0	2	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0022	6755	2	0	0	2	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0023	6757	2	2	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0024	6757	2	2	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0025	6757	2	0	2	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0026	6757	2	0	0	1	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0027	6761	2	0	0	2	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0028	6757	2	0	0	2	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0029	6753	2	1	0	0	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0030	6761	2	0	0	2	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0031	6757	2	0	0	2	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0032	6761	2	2	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0033	6763	2	0	0	2	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0034	6755	2	2	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0035	6755	2	1	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0036	6755	2	2	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0037	6757	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0038	6753	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0039	6755	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0040	6755	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0041	6755	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0042	6755	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0043	6757	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0044	6757	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0045	6757	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0046	6759	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0047	6759	1	0	0	0	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0048	6759	1	0	0	0	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0049	6759	1	0	0	0	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0050	6759	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0051	6755	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0052	6757	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0053	6753	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0054	6751	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0055	6763	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0056	6761	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0057	6761	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	1/0	t0058	6763	1	0	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0059	6759	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0060	6757	1	0	0	1	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0061	6759	1	0	1	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0062	6757	1	1	0	0	0	0	copy fasta	PEAK1	chr15	77103158	77425104
PEAK1_chr15_77103158_77425104	0/0	t0063	6757	1	0	0	0	0	1	copy fasta	PEAK1	chr15	77103158	77425104
PEAK3_chr19_2269631_2287175	0/0	t0001	1152	98	10	24	47	6	11	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0002	1139	96	2	12	66	0	16	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0003	1142	37	23	4	9	0	1	copy fasta	PEAK3	chr19	2269631	2287175