JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEAK3_chr19_2269631_2287175	0/0	t0004	1140	36	1	5	24	1	5	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	1/0	t0005	1143	33	8	7	10	3	4	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0006	1151	24	3	12	1	1	7	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0007	1143	16	15	1	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0008	1153	14	3	1	7	1	2	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0009	1139	13	0	5	8	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0010	1140	10	0	0	10	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0011	1141	8	3	4	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0012	1139	6	0	0	6	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0013	1138	5	0	2	2	1	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0014	1144	5	0	0	4	0	1	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/1	t0015	1143	4	0	1	0	1	1	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0016	1141	4	4	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0017	1141	4	4	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0018	1149	3	2	0	0	1	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0019	1150	3	1	1	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0020	1139	2	0	0	2	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0021	1139	2	0	0	2	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0022	1143	2	2	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0023	1141	2	1	1	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0024	1132	2	2	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0025	1140	2	1	1	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0026	1139	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0027	1140	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0028	1139	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0029	1138	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0030	1141	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0031	1139	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0032	1143	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0033	1140	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0034	1140	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0035	1147	1	0	0	0	1	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0036	1151	1	0	0	0	0	1	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0037	1152	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0038	1152	1	0	0	0	0	1	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0039	1141	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0040	1142	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0041	1142	1	0	1	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0042	1143	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0043	1143	1	0	1	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0044	1144	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0045	1144	1	0	1	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0046	1145	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0047	1132	1	1	0	0	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAK3_chr19_2269631_2287175	0/0	t0048	1152	1	0	0	1	0	0	copy fasta	PEAK3	chr19	2269631	2287175
PEAR1_chr1_156888718_156921429	0/0	t0001	1761	138	25	25	60	5	23	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/1	t0002	1761	74	28	8	24	6	7	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0003	1761	68	5	10	46	0	7	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0004	1761	37	7	4	20	2	4	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0005	1761	22	1	8	12	0	1	copy fasta	PEAR1	chr1	156888718	156921429