JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEAR1_chr1_156888718_156921429	0/0	t0006	1761	9	4	0	3	0	2	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0007	1761	6	4	1	0	0	1	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0008	1761	6	5	1	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0009	1761	4	4	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0010	1761	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0011	1761	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0012	1761	2	0	1	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0013	1761	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	1/0	t0014	1761	2	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0015	1761	2	2	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0016	1761	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0017	1761	1	0	0	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0018	1761	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0019	1761	1	0	0	0	1	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0020	1761	1	0	0	1	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0021	1761	1	0	0	0	0	1	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0022	1761	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEAR1_chr1_156888718_156921429	0/0	t0023	1761	1	1	0	0	0	0	copy fasta	PEAR1	chr1	156888718	156921429
PEBP1_chr12_118131124_118150584	0/1	t0001	868	130	25	34	50	3	17	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	1/0	t0002	868	109	20	13	65	2	8	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0003	869	50	10	0	40	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0004	868	49	13	6	20	4	6	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0005	867	22	4	7	9	2	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0006	867	20	2	3	11	1	3	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0007	867	9	2	4	2	1	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0008	868	9	1	0	4	1	3	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0009	868	7	7	0	0	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0010	869	6	6	0	0	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0011	868	2	0	0	2	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0012	869	2	1	1	0	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0013	869	2	0	0	2	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0014	867	2	0	0	1	1	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0015	868	1	0	0	1	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0016	868	1	0	0	1	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0017	868	1	0	1	0	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0018	868	1	0	0	0	0	1	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0019	867	1	1	0	0	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0020	868	1	0	0	0	1	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP1_chr12_118131124_118150584	0/0	t0021	867	1	0	1	0	0	0	copy fasta	PEBP1	chr12	118131124	118150584
PEBP4_chr8_22708251_22932914	1/0	t0001	218	91	33	23	16	7	11	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/1	t0002	218	88	21	9	45	5	7	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0003	220	35	18	10	4	1	2	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0004	220	29	6	6	12	4	1	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0005	218	18	1	2	10	0	5	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0006	220	9	0	3	5	1	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0007	218	2	0	0	2	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0008	219	2	1	0	1	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0009	218	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0010	218	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PEBP4_chr8_22708251_22932914	0/0	t0011	219	1	0	1	0	0	0	copy fasta	PEBP4	chr8	22708251	22932914