Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATAT1_chr6_30621874_30651821	0/1	t0001	191	405	90	74	178	16	46	copy fasta	ATAT1	chr6	30621874	30651821
ATCAY_chr19_3875685_3933082	0/0	t0001	3855	150	22	41	62	6	19	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0002	3855	111	37	16	50	2	6	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/1	t0003	3856	35	5	12	1	7	9	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0004	3855	11	0	2	8	0	1	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0005	3855	8	0	0	8	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0006	3855	4	0	0	4	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0007	3855	4	3	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0008	3855	4	4	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0009	3855	3	3	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0010	3855	3	3	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0011	3855	3	0	0	0	0	3	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0012	3856	3	2	1	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0013	3830	3	0	0	3	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0014	3856	3	3	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0015	3855	2	2	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0016	3855	2	0	0	2	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0017	3855	2	0	0	0	2	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0018	3855	2	2	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0019	3856	2	0	2	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0020	3856	2	0	2	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0021	3855	1	0	0	0	1	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0022	3855	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0023	3855	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0024	3855	1	0	0	0	0	1	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0025	3826	1	0	0	0	0	1	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0026	3855	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0027	3855	1	0	1	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0028	3855	1	0	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0029	3855	1	0	1	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0030	3855	1	0	0	0	0	1	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0031	3855	1	0	1	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0032	3855	1	0	1	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0033	3855	1	0	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0034	3855	1	0	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0035	3855	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0036	3855	1	0	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0037	3855	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0038	3855	1	0	0	0	0	1	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0039	3855	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0040	3856	1	0	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0041	3856	1	0	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	1/0	t0042	3856	1	0	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0043	3855	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0044	3855	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0045	3855	1	0	0	1	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0046	3844	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATCAY_chr19_3875685_3933082	0/0	t0047	3844	1	1	0	0	0	0	copy fasta	ATCAY	chr19	3875685	3933082
ATE1_chr10_121735424_121933031	0/1	t0001	3339	124	12	28	60	6	17	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0002	3337	59	3	2	54	0	0	copy fasta	ATE1	chr10	121735424	121933031