JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEBP4_chr8_22708251_22932914	0/0	t0012	218	1	0	0	1	0	0	copy fasta	PEBP4	chr8	22708251	22932914
PECAM1_chr17_64314415_64395860	0/0	t0001	4597	115	14	37	45	2	17	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	1/1	t0002	4597	67	10	11	24	5	15	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0003	4597	17	11	1	5	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0004	4597	15	15	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0005	4597	9	9	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0006	4594	6	5	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0007	4597	6	0	1	4	1	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0008	4597	5	0	2	0	1	2	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0009	4597	5	5	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0010	4597	4	0	4	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0011	4597	4	4	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0012	4597	3	2	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0013	4597	3	0	1	0	0	2	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0014	4597	2	2	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0015	4597	2	2	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0016	4597	2	2	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0017	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0018	4597	1	0	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0019	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0020	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0021	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0022	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0023	4597	1	0	0	0	0	1	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0024	4597	1	0	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0025	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0026	4597	1	0	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0027	4597	1	0	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0028	4597	1	0	0	1	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0029	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0030	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0031	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0032	4597	1	0	0	0	0	1	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0033	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0034	4597	1	0	0	0	0	1	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0035	4597	1	0	0	1	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0036	4597	1	0	1	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0037	4597	1	1	0	0	0	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0038	4598	1	0	0	0	1	0	copy fasta	PECAM1	chr17	64314415	64395860
PECAM1_chr17_64314415_64395860	0/0	t0039	4597	1	0	0	0	0	1	copy fasta	PECAM1	chr17	64314415	64395860
PECR_chr2_216033388_216086809	1/1	t0001	956	231	44	49	106	11	19	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0002	956	88	21	9	44	0	14	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0003	956	38	3	10	14	4	7	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0004	956	19	15	3	0	1	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0005	956	10	10	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0006	956	3	3	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0007	956	3	0	3	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0008	956	3	0	1	2	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0009	956	2	2	0	0	0	0	copy fasta	PECR	chr2	216033388	216086809
PECR_chr2_216033388_216086809	0/0	t0010	956	1	0	1	0	0	0	copy fasta	PECR	chr2	216033388	216086809