JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEDS1_chr20_50113254_50158723	0/0	t0001	6890	75	5	14	41	3	12	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0002	6904	42	0	12	25	0	5	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0003	6896	35	1	7	21	4	2	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0004	6900	17	1	6	8	1	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0005	6893	17	1	1	9	1	5	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	1/0	t0006	6891	15	0	7	3	2	2	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0007	6900	15	14	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0008	6897	8	0	3	1	1	3	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0009	6890	7	0	0	7	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0010	6889	6	0	2	2	0	2	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0011	6897	6	6	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0012	6895	6	5	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0013	6894	5	1	2	0	0	2	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0014	6891	4	2	0	0	2	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0015	6889	4	1	0	3	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0016	6904	4	0	0	4	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0017	6900	3	3	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0018	6908	3	0	1	2	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0019	6900	3	2	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/1	t0020	6894	3	0	2	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0021	6899	2	1	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0022	6886	2	0	0	2	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0023	6893	2	2	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0024	6903	2	0	0	1	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0025	6904	2	0	0	2	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0026	6897	2	2	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0027	6891	2	2	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0028	6900	2	1	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0029	6897	2	0	0	2	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0030	6902	2	2	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0031	6897	2	0	2	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0032	6894	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0033	6895	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0034	6904	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0035	6904	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0036	6904	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0037	6900	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0038	6890	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0039	6900	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0040	6897	1	0	0	0	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0041	6904	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0042	6897	1	0	0	0	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0043	6897	1	0	0	0	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0044	6898	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0045	6900	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0046	6890	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0047	6890	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0048	6894	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0049	6890	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0050	6890	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723