JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEDS1_chr20_50113254_50158723	0/0	t0051	6892	1	0	0	0	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0052	6892	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0053	6890	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0054	6891	1	0	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0055	6901	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0056	6890	1	0	0	0	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0057	6904	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0058	6898	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0059	6899	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0060	6894	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0061	6903	1	0	0	0	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0062	6899	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0063	6904	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0064	6899	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0065	6900	1	0	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0066	6896	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0067	6897	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0068	6907	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0069	6937	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0070	6900	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0071	6904	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0072	6895	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0073	6896	1	0	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0074	6906	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0075	6901	1	0	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0076	6901	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0077	6890	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0078	6904	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0079	6890	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0080	6900	1	0	0	0	0	1	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0081	6900	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0082	6901	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0083	6897	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0084	6896	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0085	6903	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0086	6901	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0087	6895	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0088	6906	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0089	6894	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0090	6901	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0091	6897	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0092	6894	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0093	6896	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0094	6897	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0095	6890	1	0	1	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0096	6897	1	0	0	1	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEDS1_chr20_50113254_50158723	0/0	t0097	6895	1	1	0	0	0	0	copy fasta	PEDS1	chr20	50113254	50158723
PEF1_chr1_31624866_31649876	1/1	t0001	760	330	65	65	144	12	42	copy fasta	PEF1	chr1	31624866	31649876
PEF1_chr1_31624866_31649876	0/0	t0002	760	10	9	1	0	0	0	copy fasta	PEF1	chr1	31624866	31649876
PEF1_chr1_31624866_31649876	0/0	t0003	760	3	3	0	0	0	0	copy fasta	PEF1	chr1	31624866	31649876