JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEF1_chr1_31624866_31649876	0/0	t0004	760	2	0	0	2	0	0	copy fasta	PEF1	chr1	31624866	31649876
PEF1_chr1_31624866_31649876	0/0	t0005	760	1	1	0	0	0	0	copy fasta	PEF1	chr1	31624866	31649876
PEG3_chr19_56805082_56845726	1/0	t0001	3988	91	8	11	62	3	6	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0002	3989	83	2	16	53	2	10	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/1	t0003	3988	57	1	11	33	3	8	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0004	3988	32	17	10	1	1	3	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0005	3990	30	0	10	9	3	8	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0006	3988	13	1	7	0	2	3	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0007	3988	8	8	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0008	3988	6	6	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0009	3989	6	6	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0010	3988	5	0	0	5	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0011	3988	5	5	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0012	3990	5	0	0	5	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0013	3988	4	3	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0014	3988	4	0	2	1	0	1	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0015	3988	4	3	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0016	3988	4	4	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0017	3990	3	0	0	3	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0018	3988	3	3	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0019	3988	3	3	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0020	3988	3	0	0	3	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0021	3990	3	3	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0022	3988	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0023	3989	2	0	0	0	2	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0024	3985	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0025	3983	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0026	3989	2	0	1	0	0	1	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0027	3990	2	0	0	2	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0028	3988	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0029	3988	2	1	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0030	3988	2	2	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0031	3989	2	0	0	0	0	2	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0032	3988	1	0	0	0	0	1	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0033	3989	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0034	3988	1	0	0	0	0	1	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0035	3988	1	0	0	0	0	1	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0036	3988	1	0	0	0	0	1	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0037	3989	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0038	3988	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0039	3988	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0040	3983	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0041	3989	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0042	3991	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0043	3984	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0044	3987	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0045	3989	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0046	3989	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0047	3988	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0048	3989	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726