JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEG3_chr19_56805082_56845726	0/0	t0049	3987	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0050	3979	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0051	3988	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0052	3988	1	0	0	1	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0053	3990	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0054	3988	1	1	0	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PEG3_chr19_56805082_56845726	0/0	t0055	3989	1	0	1	0	0	0	copy fasta	PEG3	chr19	56805082	56845726
PELI1_chr2_64087652_64149420	1/1	t0001	2460	203	58	36	69	7	31	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0002	2460	48	3	13	24	0	8	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0003	2458	12	5	2	5	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0004	2460	8	3	3	1	1	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0005	2458	5	5	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0006	2479	3	0	3	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0007	2460	3	0	0	2	0	1	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0008	2458	2	0	2	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0009	2458	2	2	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0010	2460	2	0	1	1	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0011	2458	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0012	2458	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0013	2460	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0014	2460	1	0	0	0	0	1	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0015	2458	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0016	2458	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0017	2460	1	0	1	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0018	2460	1	0	0	1	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0019	2460	1	0	0	1	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0020	2460	1	0	1	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0021	2460	1	0	0	0	0	1	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0022	2458	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0023	2458	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0024	2460	1	1	0	0	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0025	2460	1	0	0	1	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI1_chr2_64087652_64149420	0/0	t0026	2458	1	0	0	1	0	0	copy fasta	PELI1	chr2	64087652	64149420
PELI2_chr14_56113411_56306524	0/0	t0001	4611	91	12	18	45	3	13	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	1/0	t0002	4609	53	1	11	38	1	1	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0003	4611	52	14	6	29	0	3	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0004	4609	41	0	11	15	6	9	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0005	4610	22	14	5	0	1	2	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0006	4612	22	2	4	8	4	4	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0007	4612	7	6	1	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0008	4609	5	5	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0009	4612	5	1	0	4	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0010	4612	4	0	0	0	1	3	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0011	4611	3	3	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0012	4611	3	3	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0013	4608	3	0	2	0	1	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0014	4611	2	0	0	2	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0015	4612	2	0	0	2	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0016	4609	2	2	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0017	4611	2	2	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524