JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PELI2_chr14_56113411_56306524	0/0	t0018	4610	2	2	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0019	4610	2	2	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0020	4611	2	2	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0021	4612	2	0	1	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0022	4598	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0023	4597	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0024	4598	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0025	4600	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0026	4611	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0027	4610	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0028	4610	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0029	4610	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0030	4592	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0031	4611	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0032	4611	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0033	4612	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0034	4592	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/1	t0035	4611	1	0	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0036	4611	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0037	4609	1	0	1	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0038	4609	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0039	4609	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0040	4610	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0041	4610	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0042	4611	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0043	4610	1	0	1	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0044	4609	1	0	1	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0045	4609	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0046	4609	1	0	0	0	0	1	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0047	4609	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0048	4610	1	0	0	0	0	1	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0049	4609	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0050	4609	1	0	1	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0051	4610	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0052	4610	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0053	4609	1	0	0	0	0	1	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0054	4609	1	0	0	0	0	1	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0055	4610	1	1	0	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0056	4610	1	0	0	0	0	1	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0057	4612	1	0	0	0	1	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0058	4612	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0059	4611	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0060	4608	1	0	1	0	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0061	4623	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI2_chr14_56113411_56306524	0/0	t0062	4621	1	0	0	1	0	0	copy fasta	PELI2	chr14	56113411	56306524
PELI3_chr11_66461905_66482337	1/1	t0001	1294	256	59	56	109	8	22	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0002	1294	102	8	16	67	3	8	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0003	1294	10	9	1	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0004	1294	10	5	2	0	3	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0005	1292	5	5	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337