JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PELI3_chr11_66461905_66482337	0/0	t0006	1294	5	4	1	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0007	1294	1	0	0	1	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0008	1294	1	0	0	0	0	1	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0009	1294	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0010	1294	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0011	1294	1	0	0	0	0	1	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0012	1294	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0013	1294	1	0	0	1	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELI3_chr11_66461905_66482337	0/0	t0014	1294	1	1	0	0	0	0	copy fasta	PELI3	chr11	66461905	66482337
PELO_chr5_52782916_52809044	0/0	t0001	3210	112	6	21	55	12	18	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0002	3214	82	17	19	35	3	8	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0003	3214	61	2	9	43	0	7	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/1	t0004	3214	49	6	9	24	2	7	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	1/0	t0005	3214	47	10	6	27	0	3	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0006	3213	28	27	1	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0007	3214	18	0	0	18	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0008	3213	6	5	1	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0009	3214	6	6	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0010	3214	5	2	2	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0011	3214	4	0	0	4	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0012	3214	3	3	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0013	3214	2	0	0	2	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0014	3214	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0015	3214	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0016	3214	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0017	3214	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0018	3210	1	0	0	0	0	1	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0019	3214	1	0	0	0	1	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0020	3214	1	0	0	0	0	1	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0021	3214	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0022	3213	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0023	3214	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0024	3214	1	0	1	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0025	3213	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0026	3210	1	0	1	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0027	3214	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0028	3214	1	0	0	1	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0029	3214	1	0	0	0	0	1	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0030	3214	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0031	3214	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELO_chr5_52782916_52809044	0/0	t0032	3213	1	1	0	0	0	0	copy fasta	PELO	chr5	52782916	52809044
PELP1_chr17_4664774_4709137	0/1	t0001	1692	184	36	38	75	4	30	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0002	1692	30	2	1	25	0	2	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0003	1692	16	1	6	1	3	5	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0004	1692	15	5	8	0	1	1	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	1/0	t0005	1692	12	11	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0006	1686	11	11	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0007	1688	11	9	2	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0008	1692	8	8	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0009	1693	7	1	0	6	0	0	copy fasta	PELP1	chr17	4664774	4709137