JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PELP1_chr17_4664774_4709137	0/0	t0010	1693	5	0	2	3	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0011	1692	2	2	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0012	1692	2	0	0	0	0	2	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0013	1692	2	0	0	2	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0014	1692	2	0	0	2	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0015	1692	2	2	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0016	1688	2	2	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0017	1692	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0018	1692	1	0	1	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0019	1693	1	1	0	0	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0020	1692	1	0	0	1	0	0	copy fasta	PELP1	chr17	4664774	4709137
PELP1_chr17_4664774_4709137	0/0	t0021	1692	1	0	0	1	0	0	copy fasta	PELP1	chr17	4664774	4709137
PEMT_chr17_17500563_17596708	1/1	t0001	311	344	90	70	128	16	38	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	t0002	311	3	3	0	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PEMT_chr17_17500563_17596708	0/0	t0003	311	1	1	0	0	0	0	copy fasta	PEMT	chr17	17500563	17596708
PENK_chr8_56435957_56451641	1/0	t0001	448	198	80	28	78	3	8	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/1	t0002	447	130	9	25	69	5	21	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	t0003	448	85	6	21	45	4	9	copy fasta	PENK	chr8	56435957	56451641
PENK_chr8_56435957_56451641	0/0	t0004	448	23	1	2	14	0	6	copy fasta	PENK	chr8	56435957	56451641
PEPD_chr19_33381950_33526791	1/0	t0001	426	201	51	30	89	8	22	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	t0002	431	74	27	15	23	5	4	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/1	t0003	430	23	0	17	0	3	2	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	t0004	426	12	0	0	12	0	0	copy fasta	PEPD	chr19	33381950	33526791
PEPD_chr19_33381950_33526791	0/0	t0005	426	4	4	0	0	0	0	copy fasta	PEPD	chr19	33381950	33526791
PER1_chr17_8135472_8157404	1/1	t0001	804	416	86	84	190	12	42	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	t0002	802	4	4	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	t0003	804	3	0	0	3	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	t0004	804	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	t0005	804	1	0	0	1	0	0	copy fasta	PER1	chr17	8135472	8157404
PER1_chr17_8135472_8157404	0/0	t0006	804	1	1	0	0	0	0	copy fasta	PER1	chr17	8135472	8157404
PER2_chr2_238239044_238293610	1/1	t0001	2613	135	9	21	73	8	22	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0002	2612	58	7	13	23	4	11	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0003	2614	25	2	6	15	1	1	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0004	2615	25	13	2	8	0	2	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0005	2614	22	1	11	8	0	2	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0006	2613	14	13	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0007	2606	10	3	0	4	0	3	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0008	2611	9	7	2	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0009	2613	9	1	2	2	1	3	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0010	2614	8	7	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0011	2613	6	4	2	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0012	2613	5	1	1	3	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0013	2615	4	0	1	3	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0014	2614	3	3	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0015	2614	3	3	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0016	2615	3	2	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0017	2615	3	0	0	3	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0018	2602	2	2	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0019	2613	2	0	0	2	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0020	2613	2	2	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610