JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PER2_chr2_238239044_238293610	0/0	t0021	2612	2	2	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0022	2615	2	2	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0023	2614	2	0	0	2	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0024	2613	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0025	2576	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0026	2614	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0027	2606	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0028	2612	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0029	2613	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0030	2613	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0031	2613	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0032	2615	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0033	2611	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0034	2612	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0035	2613	1	0	0	1	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0036	2613	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0037	2611	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0038	2613	1	1	0	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER2_chr2_238239044_238293610	0/0	t0039	2613	1	0	1	0	0	0	copy fasta	PER2	chr2	238239044	238293610
PER3_chr1_7779291_7850177	0/0	t0001	2733	363	70	66	182	9	36	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0002	2733	15	13	2	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	1/1	t0003	2733	7	1	2	0	2	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0004	2733	5	0	0	5	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0005	2733	4	4	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0006	2733	3	1	1	0	1	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0007	2733	2	0	0	0	2	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0008	2733	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0009	2733	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0010	2733	1	0	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0011	2733	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0012	2733	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0013	2733	1	0	0	1	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0014	2733	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0015	2733	1	0	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0016	2733	1	0	1	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0017	2733	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PER3_chr1_7779291_7850177	0/0	t0018	2733	1	1	0	0	0	0	copy fasta	PER3	chr1	7779291	7850177
PERCC1_chr16_1426078_1439441	0/0	t0001	1122	123	4	26	74	4	15	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0002	1122	44	29	3	8	0	4	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/1	t0003	1122	27	5	5	11	0	5	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0004	1123	26	0	12	5	4	5	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0005	1122	24	12	8	1	0	3	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0006	1122	21	7	1	2	2	9	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	1/0	t0007	1123	9	0	6	0	0	2	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0008	1123	8	2	3	3	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0009	1122	7	6	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0010	1122	6	3	0	3	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0011	1123	6	0	1	5	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0012	1122	6	0	1	4	1	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0013	1122	5	0	0	1	3	1	copy fasta	PERCC1	chr16	1426078	1439441