JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PERCC1_chr16_1426078_1439441	0/0	t0014	1122	4	4	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0015	1123	4	1	0	3	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0016	1122	4	3	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0017	1122	4	4	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0018	1122	3	3	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0019	1122	3	0	0	3	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0020	1122	2	0	1	0	1	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0021	1123	2	2	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0022	1122	2	2	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0023	1122	2	2	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0024	1122	2	2	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0025	1122	2	0	2	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0026	1124	2	0	1	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0027	1122	2	0	0	2	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0028	1123	2	0	0	0	0	2	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0029	1122	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0030	1123	1	0	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0031	1123	1	0	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0032	1122	1	0	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0033	1123	1	0	0	0	1	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0034	1123	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0035	1123	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0036	1122	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0037	1122	1	0	0	0	0	1	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0038	1122	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0039	1123	1	0	0	0	0	1	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0040	1123	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0041	1122	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0042	1122	1	0	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0043	1123	1	0	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0044	1103	1	0	0	0	0	1	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0045	1122	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0046	1122	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0047	1124	1	1	0	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0048	1123	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0049	1122	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0050	1122	1	0	0	0	0	1	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0051	1123	1	0	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0052	1122	1	0	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0053	1123	1	0	0	1	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERCC1_chr16_1426078_1439441	0/0	t0054	1122	1	0	1	0	0	0	copy fasta	PERCC1	chr16	1426078	1439441
PERM1_chr1_970198_987093	0/1	t0001	1148	159	11	36	80	6	25	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0002	1148	106	36	30	30	2	8	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0003	1148	48	8	3	34	2	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0004	1148	48	13	9	13	5	8	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	1/0	t0005	1148	23	19	2	0	1	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0006	1148	4	0	0	4	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0007	1148	3	0	0	0	0	3	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0008	1148	3	3	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0009	1148	2	2	0	0	0	0	copy fasta	PERM1	chr1	970198	987093