Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATE1_chr10_121735424_121933031	0/0	t0003	3339	47	11	19	9	1	7	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0004	3337	16	12	3	0	0	1	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	1/0	t0005	3339	13	12	0	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0006	3339	13	12	1	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0007	3337	11	0	1	6	0	4	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0008	3338	7	6	1	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0009	3339	7	7	0	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0010	3337	4	0	0	4	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0011	3339	3	3	0	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0012	3339	3	0	0	0	0	3	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0013	3313	2	0	0	2	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0014	3339	2	2	0	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0015	3339	1	1	0	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0016	3339	1	0	0	0	0	1	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0017	3337	1	0	0	1	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0018	3339	1	0	0	0	0	1	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0019	3339	1	0	1	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0020	3339	1	0	1	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0021	3339	1	0	1	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0022	3339	1	0	0	0	1	0	copy fasta	ATE1	chr10	121735424	121933031
ATE1_chr10_121735424_121933031	0/0	t0023	3339	1	1	0	0	0	0	copy fasta	ATE1	chr10	121735424	121933031
ATF1_chr12_50759101_50826162	0/0	t0001	1597	126	33	26	55	0	12	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/1	t0002	1597	118	27	16	53	5	16	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	1/0	t0003	1597	87	6	13	63	0	4	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0004	1599	25	4	9	1	5	6	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0005	1598	6	6	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0006	1597	5	5	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0007	1597	3	3	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0008	1597	2	0	0	2	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0009	1601	2	2	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0010	1597	1	0	1	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0011	1598	1	0	0	1	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0012	1598	1	0	1	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0013	1597	1	1	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0014	1597	1	1	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0015	1601	1	1	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0016	1598	1	0	0	1	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF1_chr12_50759101_50826162	0/0	t0017	1598	1	1	0	0	0	0	copy fasta	ATF1	chr12	50759101	50826162
ATF2_chr2_175067259_175173203	1/1	t0001	2647	149	45	19	54	9	20	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0002	2647	40	1	4	26	4	5	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0003	2647	17	16	1	0	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0004	2647	5	1	3	0	1	0	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0005	2647	3	0	0	2	0	1	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0006	2647	2	2	0	0	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0007	2647	2	0	0	2	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0008	2647	1	0	0	0	0	1	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0009	2647	1	0	1	0	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0010	2647	1	0	0	0	0	1	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0011	2647	1	1	0	0	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF2_chr2_175067259_175173203	0/0	t0012	2647	1	1	0	0	0	0	copy fasta	ATF2	chr2	175067259	175173203