JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PERM1_chr1_970198_987093	0/0	t0010	1148	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0011	1148	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0012	1148	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0013	1148	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0014	1148	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0015	1148	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0016	1148	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0017	1148	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0018	1148	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0019	1148	1	1	0	0	0	0	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0020	1116	1	0	0	0	0	1	copy fasta	PERM1	chr1	970198	987093
PERM1_chr1_970198_987093	0/0	t0021	1148	1	0	0	1	0	0	copy fasta	PERM1	chr1	970198	987093
PERP_chr6_138083505_138112419	0/0	t0001	3618	55	1	14	32	2	6	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	1/0	t0002	3617	30	15	3	9	1	1	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0003	3619	29	5	11	7	1	5	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0004	3617	27	1	1	19	1	5	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0005	3614	23	0	9	11	1	2	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/1	t0006	3618	16	0	9	0	3	3	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0007	3618	14	5	0	7	0	2	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0008	3618	12	1	2	9	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0009	3618	12	0	0	12	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0010	3618	11	4	7	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0011	3613	10	0	0	10	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0012	3617	9	0	0	9	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0013	3611	8	2	1	1	0	4	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0014	3618	7	1	0	0	0	6	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0015	3615	7	0	0	7	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0016	3618	6	6	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0017	3614	6	0	0	5	0	1	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0018	3612	6	0	4	2	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0019	3618	5	0	2	0	2	1	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0020	3618	5	0	0	5	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0021	3618	5	5	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0022	3618	5	1	0	4	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0023	3617	4	0	3	0	1	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0024	3614	4	0	3	1	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0025	3617	4	4	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0026	3618	4	0	0	4	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0027	3614	4	0	2	2	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0028	3607	4	0	0	4	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0029	3613	3	0	0	0	0	3	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0030	3617	3	2	0	1	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0031	3614	3	3	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0032	3618	3	0	0	2	1	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0033	3617	3	2	0	1	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0034	3615	3	3	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0035	3611	3	0	1	0	0	2	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0036	3612	3	0	0	0	0	3	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0037	3619	2	1	1	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0038	3618	2	0	0	2	0	0	copy fasta	PERP	chr6	138083505	138112419