JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PERP_chr6_138083505_138112419	0/0	t0089	3618	1	0	0	1	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0090	3615	1	1	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0091	3615	1	1	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0092	3616	1	0	1	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0093	3611	1	0	0	1	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0094	3611	1	0	0	0	1	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0095	3615	1	1	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0096	3616	1	1	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PERP_chr6_138083505_138112419	0/0	t0097	3616	1	1	0	0	0	0	copy fasta	PERP	chr6	138083505	138112419
PES1_chr22_30571625_30596910	1/1	t0001	499	184	27	28	101	9	17	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	t0002	499	178	50	47	47	9	25	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	t0003	499	59	9	3	45	0	2	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	t0004	499	8	0	5	3	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	t0005	499	1	0	1	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	t0006	499	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PES1_chr22_30571625_30596910	0/0	t0007	499	1	1	0	0	0	0	copy fasta	PES1	chr22	30571625	30596910
PET100_chr19_7624793_7636956	1/1	t0001	442	367	84	67	156	16	42	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	t0002	442	15	0	13	2	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	t0003	442	5	5	0	0	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	t0004	442	5	0	0	5	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	t0005	442	4	4	0	0	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	t0006	442	4	4	0	0	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	t0007	442	1	1	0	0	0	0	copy fasta	PET100	chr19	7624793	7636956
PET100_chr19_7624793_7636956	0/0	t0008	442	1	0	0	1	0	0	copy fasta	PET100	chr19	7624793	7636956
PET117_chr20_18132863_18148169	0/1	t0001	905	259	57	37	132	9	23	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	1/0	t0002	906	82	30	27	3	4	17	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0003	906	68	0	14	45	5	4	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0004	906	5	5	0	0	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0005	905	2	1	1	0	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0006	905	2	0	0	0	0	2	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0007	905	1	0	0	1	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0008	906	1	1	0	0	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0009	905	1	1	0	0	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0010	906	1	0	1	0	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0011	906	1	0	0	1	0	0	copy fasta	PET117	chr20	18132863	18148169
PET117_chr20_18132863_18148169	0/0	t0012	906	1	1	0	0	0	0	copy fasta	PET117	chr20	18132863	18148169
PEX10_chr1_2398974_2417564	0/1	t0001	1855	124	29	30	40	9	15	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0002	1855	91	3	16	56	5	11	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	1/0	t0003	1855	43	14	6	16	1	5	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0004	1855	20	18	2	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0005	1855	16	3	3	7	0	3	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0006	1856	10	0	4	4	0	2	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0007	1856	6	1	1	2	0	2	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0008	1856	4	0	2	0	2	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0009	1856	4	1	0	1	0	2	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0010	1855	3	0	0	0	0	3	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0011	1855	3	3	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0012	1855	3	3	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0013	1855	2	0	0	2	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0014	1855	2	2	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564