JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX10_chr1_2398974_2417564	0/0	t0015	1855	2	2	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0016	1855	2	2	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0017	1856	2	0	2	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0018	1855	2	2	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0019	1855	2	0	0	2	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0020	1856	2	0	0	2	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0021	1856	1	0	0	1	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0022	1855	1	0	1	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0023	1855	1	0	0	1	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0024	1855	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0025	1855	1	0	0	1	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0026	1855	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0027	1855	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0028	1855	1	0	1	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0029	1855	1	0	0	0	1	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0030	1855	1	0	0	1	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0031	1855	1	0	0	0	0	1	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0032	1855	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0033	1855	1	0	0	0	0	1	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0034	1855	1	0	0	0	0	1	copy fasta	PEX10	chr1	2398974	2417564
PEX10_chr1_2398974_2417564	0/0	t0035	1856	1	1	0	0	0	0	copy fasta	PEX10	chr1	2398974	2417564
PEX11A_chr15_89676535_89695754	1/0	t0001	1965	329	71	55	158	10	34	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0002	1965	52	17	16	0	5	14	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/1	t0003	1965	32	0	3	25	2	1	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0004	1965	4	0	0	4	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0005	1965	3	2	1	0	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0006	1965	2	2	0	0	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0007	1965	2	2	0	0	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0008	1965	1	0	0	1	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0009	1965	1	0	0	0	0	1	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0010	1965	1	0	0	1	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0011	1965	1	0	0	0	1	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0012	1965	1	0	1	0	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0013	1965	1	0	1	0	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0014	1965	1	0	0	1	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11A_chr15_89676535_89695754	0/0	t0015	1965	1	0	1	0	0	0	copy fasta	PEX11A	chr15	89676535	89695754
PEX11B_chr1_145906350_145923717	1/1	t0001	841	359	91	68	153	6	39	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	t0002	841	2	0	0	0	0	2	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	t0003	841	1	0	0	1	0	0	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	t0004	841	1	0	0	1	0	0	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	t0005	841	1	1	0	0	0	0	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	t0006	841	1	1	0	0	0	0	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	t0007	841	1	0	0	1	0	0	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	t0008	841	1	1	0	0	0	0	copy fasta	PEX11B	chr1	145906350	145923717
PEX11B_chr1_145906350_145923717	0/0	t0009	841	1	0	0	0	0	1	copy fasta	PEX11B	chr1	145906350	145923717
PEX11G_chr19_7471875_7494035	1/1	t0001	353	400	86	71	183	16	42	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	t0002	353	6	4	1	0	0	1	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	t0003	353	3	3	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	t0004	353	2	0	0	0	0	2	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	t0005	353	2	0	0	0	2	0	copy fasta	PEX11G	chr19	7471875	7494035