JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX11G_chr19_7471875_7494035	0/0	t0006	353	1	0	0	1	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	t0007	353	1	0	0	0	0	1	copy fasta	PEX11G	chr19	7471875	7494035
PEX11G_chr19_7471875_7494035	0/0	t0008	353	1	1	0	0	0	0	copy fasta	PEX11G	chr19	7471875	7494035
PEX12_chr17_35569795_35583571	0/0	t0001	1534	125	14	27	71	2	11	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0002	1538	72	11	17	37	1	6	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0003	1534	59	20	6	29	0	4	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0004	1535	45	1	2	38	0	4	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/1	t0005	1538	35	6	9	6	5	8	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	1/0	t0006	1538	33	0	4	25	1	2	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0007	1538	19	16	3	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0008	1538	15	15	0	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0009	1536	12	3	4	0	2	3	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0010	1538	5	0	3	0	2	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0011	1538	4	2	2	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0012	1533	3	0	0	2	1	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0013	1534	3	3	0	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0014	1534	2	2	0	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0015	1538	1	1	0	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0016	1534	1	0	0	1	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0017	1547	1	0	0	1	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX12_chr17_35569795_35583571	0/0	t0018	1534	1	0	1	0	0	0	copy fasta	PEX12	chr17	35569795	35583571
PEX13_chr2_61012720_61056990	0/1	t0001	3261	105	6	19	65	4	10	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0002	3261	100	18	20	56	3	3	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0003	3261	74	36	22	7	4	5	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0004	3261	26	2	11	8	3	2	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0005	3261	8	6	2	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0006	3261	8	8	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0007	3262	5	1	0	4	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0008	3261	4	4	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0009	3260	4	0	1	3	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0010	3261	3	3	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0011	3262	2	1	0	1	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0012	3261	1	0	0	1	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0013	3261	1	0	0	0	0	1	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0014	3261	1	1	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0015	3261	1	0	1	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0016	3261	1	1	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0017	3261	1	0	0	1	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0018	3260	1	0	0	1	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0019	3261	1	0	0	1	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0020	3261	1	0	0	0	0	1	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0021	3261	1	0	0	1	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0022	3261	1	1	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0023	3261	1	1	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0024	3261	1	1	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	0/0	t0025	3262	1	0	0	1	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX13_chr2_61012720_61056990	1/0	t0026	3261	1	0	0	0	0	0	copy fasta	PEX13	chr2	61012720	61056990
PEX14_chr1_10469950_10635758	1/1	t0001	789	253	81	47	88	10	25	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	t0002	789	1	1	0	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	t0003	789	1	0	0	1	0	0	copy fasta	PEX14	chr1	10469950	10635758