JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX14_chr1_10469950_10635758	0/0	t0004	789	1	0	1	0	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	t0005	789	1	0	0	1	0	0	copy fasta	PEX14	chr1	10469950	10635758
PEX14_chr1_10469950_10635758	0/0	t0006	789	1	0	0	0	0	1	copy fasta	PEX14	chr1	10469950	10635758
PEX16_chr11_45904663_45922877	1/0	t0001	658	202	62	26	91	4	18	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/1	t0002	658	116	10	45	30	9	21	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0003	658	21	9	0	7	0	5	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0004	658	12	1	7	0	3	1	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0005	658	8	7	0	0	0	1	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0006	658	3	1	2	0	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0007	658	3	3	0	0	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0008	658	2	0	0	2	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0009	658	1	0	0	1	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0010	658	1	0	0	1	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX16_chr11_45904663_45922877	0/0	t0011	658	1	1	0	0	0	0	copy fasta	PEX16	chr11	45904663	45922877
PEX19_chr1_160271807_160290133	1/1	t0001	2754	149	31	28	73	4	11	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0002	2754	143	15	30	69	8	21	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0003	2754	15	13	2	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0004	2754	14	14	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0005	2754	13	0	1	12	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0006	2754	12	0	0	12	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0007	2752	4	4	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0008	2754	4	0	2	0	2	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0009	2754	4	4	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0010	2754	3	3	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0011	2754	3	0	0	3	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0012	2754	2	2	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0013	2754	2	0	0	2	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0014	2754	2	2	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0015	2754	1	1	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0016	2754	1	0	0	1	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0017	2754	1	1	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0018	2754	1	1	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0019	2754	1	1	0	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0020	2754	1	0	1	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0021	2754	1	0	1	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX19_chr1_160271807_160290133	0/0	t0022	2754	1	0	1	0	0	0	copy fasta	PEX19	chr1	160271807	160290133
PEX1_chr7_92482025_92533520	1/1	t0001	518	281	62	38	133	9	37	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	t0002	518	27	7	6	10	3	1	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	t0003	518	1	1	0	0	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX1_chr7_92482025_92533520	0/0	t0004	484	1	0	0	1	0	0	copy fasta	PEX1	chr7	92482025	92533520
PEX26_chr22_18072990_18110396	0/1	t0001	17724	45	3	13	17	1	10	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0002	17723	21	1	2	17	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0003	17723	15	0	1	11	0	3	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0004	17711	11	3	4	0	0	4	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0005	17725	10	0	2	8	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0006	17723	9	9	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0007	17724	8	0	0	7	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0008	17712	8	4	3	0	1	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0009	17710	7	0	0	7	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0010	17724	5	0	0	5	0	0	copy fasta	PEX26	chr22	18072990	18110396