JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX26_chr22_18072990_18110396	0/0	t0061	17724	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0062	17725	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0063	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0064	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0065	17718	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0066	17723	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0067	17726	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0068	17726	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0069	17725	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0070	17725	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0071	17727	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0072	17720	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0073	17724	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0074	17720	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0075	17719	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0076	17721	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0077	17720	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0078	17724	1	0	0	0	1	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0079	17724	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0080	17762	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0081	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0082	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0083	17724	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0084	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0085	17725	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0086	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0087	17725	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0088	17725	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0089	17725	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0090	17720	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0091	17724	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0092	17723	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0093	17722	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0094	17724	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0095	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0096	17724	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0097	17724	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0098	17722	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0099	17718	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0100	17726	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0101	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0102	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0103	17722	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0104	17722	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0105	17719	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0106	17711	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0107	17720	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0108	17713	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0109	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0110	17725	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396