JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX26_chr22_18072990_18110396	0/0	t0161	17722	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0162	17722	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0163	17724	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0164	17723	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0165	17722	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0166	17724	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0167	17711	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0168	17712	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0169	17710	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0170	17709	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0171	17710	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0172	17710	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0173	17713	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0174	17722	1	0	0	0	1	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0175	17718	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0176	17719	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0177	17720	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0178	17720	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0179	17720	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0180	17723	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0181	17716	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0182	17718	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0183	17717	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0184	17724	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0185	17727	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0186	17712	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0187	17711	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0188	17711	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0189	17711	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0190	17711	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0191	17727	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0192	17711	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0193	17712	1	0	0	1	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0194	17720	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0195	17720	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0196	17725	1	0	0	0	1	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0197	17712	1	1	0	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0198	17721	1	0	0	0	1	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0199	17723	1	0	0	0	0	1	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0200	17722	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX26_chr22_18072990_18110396	0/0	t0201	17711	1	0	1	0	0	0	copy fasta	PEX26	chr22	18072990	18110396
PEX2_chr8_76975258_77005078	0/0	t0001	3252	122	26	17	62	5	12	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/1	t0002	3252	98	26	22	39	5	5	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0003	3252	64	1	14	39	1	9	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0004	3252	32	3	3	22	1	3	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0005	3252	15	13	2	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0006	3252	8	3	4	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0007	3252	8	0	7	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0008	3252	7	0	1	4	0	2	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	1/0	t0009	3252	6	2	0	0	0	3	copy fasta	PEX2	chr8	76975258	77005078