Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATF2_chr2_175067259_175173203	0/0	t0013	2647	1	1	0	0	0	0	copy fasta	ATF2	chr2	175067259	175173203
ATF3_chr1_212603761_212625775	0/0	t0001	1395	208	42	36	92	11	27	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	1/0	t0002	1395	176	27	26	113	3	6	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/1	t0003	1395	22	8	7	0	1	5	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0004	1395	21	14	3	0	0	4	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0005	1395	12	0	4	6	0	2	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0006	1395	2	0	0	2	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0007	1395	2	0	0	2	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0008	1395	2	0	1	0	1	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0009	1395	1	1	0	0	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0010	1395	1	0	1	0	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0011	1395	1	0	0	1	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0012	1395	1	0	0	1	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF3_chr1_212603761_212625775	0/0	t0013	1395	1	0	0	1	0	0	copy fasta	ATF3	chr1	212603761	212625775
ATF4_chr22_39515562_39527683	1/0	t0001	364	252	69	50	96	10	26	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/1	t0002	365	100	24	16	33	8	18	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	t0003	364	1	1	0	0	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF4_chr22_39515562_39527683	0/0	t0004	364	1	0	0	1	0	0	copy fasta	ATF4	chr22	39515562	39527683
ATF5_chr19_49924205_49938935	1/1	t0001	1159	267	60	47	114	5	39	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0002	1159	118	15	22	66	7	8	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0003	1159	16	5	9	0	0	2	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0004	1159	13	0	0	13	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0005	1158	12	10	0	2	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0006	1160	7	1	2	3	0	1	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0007	1159	2	2	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0008	1159	2	0	0	2	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0009	1159	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0010	1159	1	1	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0011	1159	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0012	1159	1	1	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0013	1159	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0014	1159	1	1	0	0	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF5_chr19_49924205_49938935	0/0	t0015	1159	1	0	0	1	0	0	copy fasta	ATF5	chr19	49924205	49938935
ATF6B_chr6_32110264_32133246	0/0	t0001	515	196	44	40	89	7	16	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	t0002	515	138	48	14	53	3	20	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/1	t0003	515	83	2	22	42	6	10	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	t0004	516	9	0	1	8	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	t0005	515	5	0	3	0	2	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	t0006	516	4	0	0	2	0	2	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	t0007	516	3	0	0	3	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6B_chr6_32110264_32133246	0/0	t0008	515	1	0	0	1	0	0	copy fasta	ATF6B	chr6	32110264	32133246
ATF6_chr1_161761320_161969070	0/0	t0001	5451	64	10	12	31	5	6	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0002	5458	53	1	18	30	1	3	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0003	5451	47	1	9	29	5	3	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0004	5457	24	11	1	7	0	5	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0005	5458	24	0	4	16	0	4	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	1/0	t0006	5458	13	0	7	0	1	4	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0007	5451	10	0	0	10	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0008	5458	10	0	2	8	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0009	5451	4	2	2	0	0	0	copy fasta	ATF6	chr1	161761320	161969070