JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX2_chr8_76975258_77005078	0/0	t0010	3252	6	6	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0011	3252	5	4	1	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0012	3252	5	1	0	0	0	4	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0013	3252	4	4	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0014	3252	4	0	0	4	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0015	3252	3	0	0	3	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0016	3252	3	0	0	3	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0017	3252	2	0	0	2	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0018	3252	2	0	0	0	1	1	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0019	3252	2	2	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0020	3252	1	0	0	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0021	3252	1	1	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0022	3252	1	0	1	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0023	3252	1	0	0	0	0	1	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0024	3252	1	0	0	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0025	3252	1	1	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0026	3252	1	0	0	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0027	3252	1	1	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0028	3252	1	0	0	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0029	3252	1	0	1	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0030	3252	1	1	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0031	3252	1	1	0	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0032	3252	1	0	0	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0033	3252	1	0	0	0	1	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0034	3252	1	0	1	0	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX2_chr8_76975258_77005078	0/0	t0035	3252	1	0	0	1	0	0	copy fasta	PEX2	chr8	76975258	77005078
PEX3_chr6_143445805_143495616	0/0	t0001	1629	264	71	43	114	10	26	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	1/1	t0002	1629	65	4	11	33	4	11	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0003	1629	56	3	8	37	1	7	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0004	1629	8	0	6	2	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0005	1629	4	4	0	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0006	1629	3	3	0	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0007	1629	2	2	0	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0008	1629	2	0	2	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0009	1629	1	0	1	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0010	1629	1	1	0	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0011	1629	1	0	0	0	1	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0012	1629	1	0	0	1	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0013	1629	1	0	1	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0014	1629	1	1	0	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0015	1629	1	0	0	1	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX3_chr6_143445805_143495616	0/0	t0016	1629	1	1	0	0	0	0	copy fasta	PEX3	chr6	143445805	143495616
PEX5L_chr3_179789958_180041937	0/0	t0001	7208	22	1	5	7	0	9	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0002	7193	10	10	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0003	7209	7	4	2	0	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0004	7205	7	2	3	2	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	1/0	t0005	7209	6	0	1	2	0	2	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0006	7197	5	0	2	2	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0007	7208	5	0	3	0	0	2	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0008	7206	5	1	0	4	0	0	copy fasta	PEX5L	chr3	179789958	180041937