JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX5L_chr3_179789958_180041937	0/0	t0009	7207	5	2	3	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0010	7207	5	0	2	0	1	2	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0011	7194	4	1	2	0	1	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0012	7199	4	0	0	2	1	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0013	7196	4	0	1	1	0	2	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0014	7207	4	4	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0015	7208	4	0	1	2	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0016	7192	3	3	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0017	7192	3	1	2	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0018	7194	3	0	3	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0019	7198	3	0	0	1	0	2	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0020	7195	3	1	0	1	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0021	7202	3	2	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/1	t0022	7210	3	0	0	1	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0023	7207	3	0	0	2	1	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0024	7206	3	0	1	2	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0025	7205	3	3	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0026	7193	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0027	7193	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0028	7196	2	0	1	0	1	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0029	7195	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0030	7196	2	0	0	2	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0031	7195	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0032	7202	2	0	2	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0033	7210	2	0	0	2	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0034	7202	2	0	2	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0035	7212	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0036	7210	2	1	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0037	7205	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0038	7204	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0039	7206	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0040	7196	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0041	7196	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0042	7186	2	2	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0043	7205	2	1	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0044	7204	2	0	0	2	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0045	7202	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0046	7196	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0047	7194	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0048	7195	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0049	7196	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0050	7197	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0051	7198	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0052	7196	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0053	7196	1	0	0	0	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0054	7196	1	0	0	0	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0055	7196	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0056	7193	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0057	7195	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0058	7194	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937