JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX5L_chr3_179789958_180041937	0/0	t0059	7191	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0060	7192	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0061	7208	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0062	7209	1	0	0	0	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0063	7207	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0064	7210	1	0	0	0	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0065	7212	1	0	0	0	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0066	7208	1	0	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0067	7209	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0068	7207	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0069	7208	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0070	7204	1	0	0	0	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0071	7214	1	0	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0072	7208	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0073	7209	1	0	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0074	7209	1	0	0	0	0	1	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0075	7211	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0076	7210	1	0	0	0	1	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0077	7207	1	0	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0078	7209	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0079	7210	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0080	7206	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0081	7206	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0082	7205	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0083	7204	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0084	7208	1	0	0	1	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0085	7205	1	0	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0086	7233	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0087	7229	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0088	7223	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0089	7211	1	0	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0090	7217	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0091	7213	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0092	7209	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0093	7205	1	0	1	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0094	7196	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0095	7199	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0096	7204	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0097	7205	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0098	7205	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5L_chr3_179789958_180041937	0/0	t0099	7207	1	1	0	0	0	0	copy fasta	PEX5L	chr3	179789958	180041937
PEX5_chr12_7184686_7216459	0/0	t0001	1318	144	16	39	66	4	19	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	1/0	t0002	1318	124	20	13	75	8	7	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/1	t0003	1319	53	3	8	31	1	9	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0004	1319	39	36	3	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0005	1319	24	5	4	6	2	7	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0006	1318	12	0	0	12	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0007	1320	8	8	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0008	1318	8	8	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0009	1318	3	0	0	3	0	0	copy fasta	PEX5	chr12	7184686	7216459