JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PEX5_chr12_7184686_7216459	0/0	t0010	1318	3	0	0	2	1	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0011	1319	2	0	0	0	0	2	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0012	1318	1	1	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0013	1319	1	0	1	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0014	1318	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0015	1318	1	1	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0016	1318	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0017	1319	1	1	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0018	1318	1	0	0	1	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX5_chr12_7184686_7216459	0/0	t0019	1321	1	1	0	0	0	0	copy fasta	PEX5	chr12	7184686	7216459
PEX6_chr6_42958865_42984181	0/1	t0001	498	177	82	25	45	4	20	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	1/0	t0002	502	123	1	27	81	5	8	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	t0003	498	65	9	20	26	1	9	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	t0004	499	6	6	0	0	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	t0005	502	4	0	0	4	0	0	copy fasta	PEX6	chr6	42958865	42984181
PEX6_chr6_42958865_42984181	0/0	t0006	498	3	0	2	0	0	1	copy fasta	PEX6	chr6	42958865	42984181
PEX7_chr6_136817592_136918934	1/1	t0001	483	144	22	36	62	8	14	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0002	486	142	31	23	69	4	15	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0003	482	14	14	0	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0004	486	12	9	2	0	0	1	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0005	483	6	5	1	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0006	486	4	4	0	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0007	483	3	3	0	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0008	486	2	2	0	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0009	486	1	1	0	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0010	486	1	0	0	1	0	0	copy fasta	PEX7	chr6	136817592	136918934
PEX7_chr6_136817592_136918934	0/0	t0011	486	1	1	0	0	0	0	copy fasta	PEX7	chr6	136817592	136918934
PF4V1_chr4_73848296_73859483	0/1	t0001	429	402	66	70	220	16	29	copy fasta	PF4V1	chr4	73848296	73859483
PF4V1_chr4_73848296_73859483	1/0	t0002	429	40	25	2	3	0	9	copy fasta	PF4V1	chr4	73848296	73859483
PF4V1_chr4_73848296_73859483	0/0	t0003	429	5	5	0	0	0	0	copy fasta	PF4V1	chr4	73848296	73859483
PF4V1_chr4_73848296_73859483	0/0	t0004	429	1	0	0	1	0	0	copy fasta	PF4V1	chr4	73848296	73859483
PF4_chr4_73975811_73987027	1/1	t0001	468	293	71	54	119	11	36	copy fasta	PF4	chr4	73975811	73987027
PF4_chr4_73975811_73987027	0/0	t0002	468	45	1	5	34	1	4	copy fasta	PF4	chr4	73975811	73987027
PF4_chr4_73975811_73987027	0/0	t0003	468	27	22	3	0	0	2	copy fasta	PF4	chr4	73975811	73987027
PF4_chr4_73975811_73987027	0/0	t0004	468	1	0	0	1	0	0	copy fasta	PF4	chr4	73975811	73987027
PFAS_chr17_8244289_8275486	1/0	t0001	1353	205	27	34	124	3	16	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/1	t0002	1353	118	38	28	30	8	13	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0003	1353	31	10	10	4	3	4	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0004	1353	5	5	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0005	1354	5	2	1	1	0	1	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0006	1354	4	0	0	4	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0007	1353	3	3	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0008	1353	2	0	0	0	0	2	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0009	1353	2	0	0	2	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0010	1353	2	0	0	0	2	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0011	1353	2	0	0	0	0	2	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0012	1353	1	1	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0013	1353	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0014	1353	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0015	1353	1	1	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486