JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PFAS_chr17_8244289_8275486	0/0	t0016	1353	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0017	1353	1	0	0	1	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0018	1353	1	1	0	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0019	1353	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFAS_chr17_8244289_8275486	0/0	t0020	1353	1	0	1	0	0	0	copy fasta	PFAS	chr17	8244289	8275486
PFDN1_chr5_140240035_140308101	1/0	t0001	968	190	53	34	75	6	21	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0002	968	84	12	10	50	5	7	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/1	t0003	968	25	1	7	9	1	6	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0004	968	11	11	0	0	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0005	968	7	1	1	5	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0006	968	4	4	0	0	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0007	968	3	0	3	0	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0008	968	2	1	0	1	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0009	968	1	0	0	1	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0010	968	1	0	1	0	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0011	968	1	0	0	1	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN1_chr5_140240035_140308101	0/0	t0012	968	1	1	0	0	0	0	copy fasta	PFDN1	chr5	140240035	140308101
PFDN2_chr1_161095561_161123037	1/1	t0001	134	370	72	66	180	18	32	copy fasta	PFDN2	chr1	161095561	161123037
PFDN4_chr20_54203087_54224961	1/1	t0001	826	308	53	51	162	10	30	copy fasta	PFDN4	chr20	54203087	54224961
PFDN4_chr20_54203087_54224961	0/0	t0002	826	113	34	20	38	6	15	copy fasta	PFDN4	chr20	54203087	54224961
PFDN4_chr20_54203087_54224961	0/0	t0003	823	12	1	3	7	0	1	copy fasta	PFDN4	chr20	54203087	54224961
PFDN4_chr20_54203087_54224961	0/0	t0004	816	2	2	0	0	0	0	copy fasta	PFDN4	chr20	54203087	54224961
PFDN4_chr20_54203087_54224961	0/0	t0005	826	2	0	2	0	0	0	copy fasta	PFDN4	chr20	54203087	54224961
PFDN4_chr20_54203087_54224961	0/0	t0006	826	1	0	0	1	0	0	copy fasta	PFDN4	chr20	54203087	54224961
PFDN5_chr12_53290542_53304450	1/1	t0001	132	376	86	76	170	10	32	copy fasta	PFDN5	chr12	53290542	53304450
PFDN5_chr12_53290542_53304450	0/0	t0002	132	5	5	0	0	0	0	copy fasta	PFDN5	chr12	53290542	53304450
PFDN5_chr12_53290542_53304450	0/0	t0003	132	1	1	0	0	0	0	copy fasta	PFDN5	chr12	53290542	53304450
PFDN6_chr6_33284601_33295933	0/1	t0001	345	395	98	71	168	18	39	copy fasta	PFDN6	chr6	33284601	33295933
PFDN6_chr6_33284601_33295933	0/0	t0002	345	2	0	0	2	0	0	copy fasta	PFDN6	chr6	33284601	33295933
PFDN6_chr6_33284601_33295933	0/0	t0003	345	1	0	1	0	0	0	copy fasta	PFDN6	chr6	33284601	33295933
PFDN6_chr6_33284601_33295933	0/0	t0004	345	1	0	0	0	0	1	copy fasta	PFDN6	chr6	33284601	33295933
PFKFB1_chrX_54927961_54999188	1/1	t0001	624	206	57	38	81	9	19	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	t0002	624	10	9	1	0	0	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	t0003	625	3	0	0	3	0	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	t0004	624	2	2	0	0	0	0	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB1_chrX_54927961_54999188	0/0	t0005	624	1	0	0	0	0	1	copy fasta	PFKFB1	chrX	54927961	54999188
PFKFB2_chr1_207048275_207082817	0/1	t0001	5586	116	5	18	69	7	16	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0002	5556	75	28	16	21	5	5	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	1/0	t0003	5556	75	21	20	18	4	11	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0004	5586	9	1	8	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0005	5588	7	7	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0006	5564	7	7	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0007	5588	6	5	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0008	5556	6	6	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0009	5556	4	4	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0010	5588	4	4	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0011	5586	4	0	0	4	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0012	5585	3	1	0	2	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0013	5556	2	0	0	2	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0014	5588	2	2	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817