JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PFKFB2_chr1_207048275_207082817	0/0	t0015	5556	2	1	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0016	5556	1	0	0	0	1	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0017	5556	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0018	5556	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0019	5556	1	0	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0020	5587	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0021	5555	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0022	5555	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0023	5588	1	0	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0024	5556	1	0	0	1	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0025	5556	1	0	0	1	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0026	5556	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0027	5556	1	0	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0028	5556	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0029	5556	1	1	0	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0030	5586	1	0	0	1	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0031	5586	1	0	0	1	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0032	5586	1	0	0	1	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0033	5586	1	0	0	1	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0034	5586	1	0	0	0	1	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB2_chr1_207048275_207082817	0/0	t0035	5586	1	0	1	0	0	0	copy fasta	PFKFB2	chr1	207048275	207082817
PFKFB3_chr10_6197932_6240532	0/0	t0001	2920	90	4	19	49	7	11	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0002	2920	66	6	5	48	1	6	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0003	2920	20	0	9	4	4	3	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0004	2920	20	1	9	0	4	6	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0005	2920	19	1	1	17	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0006	2920	16	0	8	5	0	3	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/1	t0007	2927	15	8	6	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0008	2920	11	3	1	4	0	3	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0009	2920	10	1	1	8	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0010	2920	10	10	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0011	2920	9	0	0	9	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0012	2920	8	1	4	2	0	1	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0013	2920	6	6	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0014	2920	6	6	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0015	2920	6	0	0	2	0	4	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0016	2920	5	2	2	1	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0017	2920	4	0	0	4	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0018	2920	4	1	0	1	1	1	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0019	2920	4	0	0	1	0	3	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0020	2920	4	1	3	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0021	2918	4	4	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0022	2920	4	0	0	4	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0023	2920	3	0	0	3	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0024	2920	3	2	0	0	0	1	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0025	2920	3	0	0	2	0	1	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0026	2920	2	2	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0027	2920	2	2	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0028	2920	2	2	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0029	2920	2	1	1	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532