JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PFKFB3_chr10_6197932_6240532	0/0	t0080	2920	1	1	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0081	2927	1	1	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0082	2920	1	0	1	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0083	2921	1	0	1	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0084	2920	1	0	1	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0085	2920	1	0	1	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0086	2920	1	1	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0087	2920	1	0	1	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0088	2920	1	1	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0089	2920	1	1	0	0	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB3_chr10_6197932_6240532	0/0	t0090	2920	1	0	0	1	0	0	copy fasta	PFKFB3	chr10	6197932	6240532
PFKFB4_chr3_48512684_48561803	1/1	t0001	2090	113	20	22	47	7	15	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0002	2090	47	5	4	24	5	9	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0003	2090	40	12	0	26	1	1	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0004	2090	22	18	4	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0005	2090	6	5	1	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0006	2090	3	3	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0007	2090	2	1	1	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0008	2090	2	2	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0009	2090	1	1	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0010	2090	1	1	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0011	2090	1	1	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0012	2090	1	1	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0013	2090	1	0	0	0	0	1	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0014	2090	1	0	0	1	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0015	2090	1	1	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0016	2090	1	0	0	0	1	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0017	2090	1	1	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0018	2090	1	1	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKFB4_chr3_48512684_48561803	0/0	t0019	2090	1	1	0	0	0	0	copy fasta	PFKFB4	chr3	48512684	48561803
PFKL_chr21_44295053_44332373	0/1	t0001	565	255	52	51	104	9	38	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	1/0	t0002	565	104	25	17	52	4	5	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0003	565	9	0	8	0	0	1	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0004	565	7	5	2	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0005	565	6	6	0	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0006	565	6	6	0	0	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0007	565	1	0	0	0	1	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0008	565	1	0	0	0	0	1	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0009	565	1	0	0	1	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0010	565	1	0	0	0	0	1	copy fasta	PFKL	chr21	44295053	44332373
PFKL_chr21_44295053_44332373	0/0	t0011	565	1	0	0	1	0	0	copy fasta	PFKL	chr21	44295053	44332373
PFKM_chr12_48114364_48151404	1/1	t0001	748	409	96	76	178	14	43	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	t0002	748	2	2	0	0	0	0	copy fasta	PFKM	chr12	48114364	48151404
PFKM_chr12_48114364_48151404	0/0	t0003	748	1	0	0	0	0	1	copy fasta	PFKM	chr12	48114364	48151404
PFKP_chr10_3062548_3141802	0/1	t0001	272	96	14	13	57	3	8	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0002	272	75	2	18	41	4	10	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0003	272	56	15	19	13	4	5	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	1/0	t0004	272	45	11	10	11	2	10	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0005	268	41	18	6	10	0	7	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0006	268	28	5	2	21	0	0	copy fasta	PFKP	chr10	3062548	3141802