JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PFKP_chr10_3062548_3141802	0/0	t0007	268	16	5	5	0	3	3	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0008	272	8	0	1	7	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0009	272	7	7	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0010	272	6	3	0	2	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0011	272	5	4	1	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0012	272	4	0	2	2	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0013	272	3	0	2	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0014	268	3	0	1	2	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0015	272	3	3	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0016	262	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0017	268	1	0	0	0	0	1	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0018	272	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0019	272	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0020	268	1	1	0	0	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFKP_chr10_3062548_3141802	0/0	t0021	272	1	0	0	1	0	0	copy fasta	PFKP	chr10	3062548	3141802
PFN1_chr17_4940652_4953530	1/1	t0001	385	420	81	82	197	14	44	copy fasta	PFN1	chr17	4940652	4953530
PFN1_chr17_4940652_4953530	0/0	t0002	385	7	7	0	0	0	0	copy fasta	PFN1	chr17	4940652	4953530
PFN1_chr17_4940652_4953530	0/0	t0003	385	1	0	1	0	0	0	copy fasta	PFN1	chr17	4940652	4953530
PFN1_chr17_4940652_4953530	0/0	t0004	385	1	1	0	0	0	0	copy fasta	PFN1	chr17	4940652	4953530
PFN1_chr17_4940652_4953530	0/0	t0005	385	1	0	1	0	0	0	copy fasta	PFN1	chr17	4940652	4953530
PFN1_chr17_4940652_4953530	0/0	t0006	385	1	1	0	0	0	0	copy fasta	PFN1	chr17	4940652	4953530
PFN1_chr17_4940652_4953530	0/0	t0007	385	1	0	0	1	0	0	copy fasta	PFN1	chr17	4940652	4953530
PFN2_chr3_149959904_149975895	0/1	t0001	1626	387	66	70	192	15	43	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	1/0	t0002	1625	14	6	3	1	0	3	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0003	1626	8	6	2	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0004	1622	6	6	0	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0005	1625	3	3	0	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0006	1626	2	0	1	0	1	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0007	1625	2	2	0	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0008	1626	2	2	0	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0009	1626	2	0	2	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0010	1625	1	1	0	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0011	1626	1	0	0	1	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0012	1626	1	0	1	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0013	1626	1	0	1	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0014	1626	1	1	0	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0015	1626	1	0	0	1	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0016	1626	1	0	0	1	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN2_chr3_149959904_149975895	0/0	t0017	1626	1	1	0	0	0	0	copy fasta	PFN2	chr3	149959904	149975895
PFN3_chr5_177395109_177405661	1/1	t0001	140	404	82	74	182	16	48	copy fasta	PFN3	chr5	177395109	177405661
PFN3_chr5_177395109_177405661	0/0	t0002	140	12	12	0	0	0	0	copy fasta	PFN3	chr5	177395109	177405661
PFN4_chr2_24109809_24128334	0/0	t0001	1004	278	52	51	135	11	29	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/1	t0002	1004	36	10	6	9	3	7	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/0	t0003	1004	33	7	7	11	4	4	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/0	t0004	1004	4	3	1	0	0	0	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/0	t0005	1004	3	3	0	0	0	0	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/0	t0006	1004	1	0	1	0	0	0	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/0	t0007	1004	1	0	0	1	0	0	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	1/0	t0008	1004	1	0	0	0	0	0	copy fasta	PFN4	chr2	24109809	24128334
PFN4_chr2_24109809_24128334	0/0	t0009	1004	1	1	0	0	0	0	copy fasta	PFN4	chr2	24109809	24128334