JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGA3_chr11_61198515_61218098	0/0	t0000	0	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	1/0	t0001	447	187	41	35	80	8	22	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	t0002	447	118	51	29	20	2	16	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	t0003	447	1	0	0	1	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	t0004	51	1	0	1	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	t0005	447	1	0	1	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	t0006	447	1	0	0	1	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA3_chr11_61198515_61218098	0/0	t0007	447	1	1	0	0	0	0	copy fasta	PGA3	chr11	61198515	61218098
PGA4_chr11_61217347_61236694	0/0	t0000	0	12	3	3	1	1	4	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0001	218	247	71	38	106	6	26	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0002	218	25	2	13	1	1	8	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0003	218	6	0	0	6	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0004	218	5	5	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0005	55	2	2	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0006	218	2	0	0	2	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0007	218	2	0	0	2	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0008	218	1	0	0	1	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0009	218	1	1	0	0	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA4_chr11_61217347_61236694	0/0	t0010	218	1	0	0	1	0	0	copy fasta	PGA4	chr11	61217347	61236694
PGA5_chr11_61236175_61256444	1/1	t0001	216	276	17	65	150	9	33	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	t0002	216	65	46	3	10	0	6	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	t0003	216	40	14	2	16	1	7	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	t0004	216	18	16	2	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	t0005	216	4	1	1	0	2	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	t0006	216	2	2	0	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGA5_chr11_61236175_61256444	0/0	t0007	216	1	0	1	0	0	0	copy fasta	PGA5	chr11	61236175	61256444
PGAM1_chr10_97421191_97438444	1/1	t0001	1038	405	78	73	193	15	44	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	t0002	1042	23	3	3	14	1	2	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	t0003	1038	4	4	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	t0004	1042	2	2	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	t0005	1038	1	1	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	t0006	1042	1	1	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	t0007	1042	1	1	0	0	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM1_chr10_97421191_97438444	0/0	t0008	1038	1	0	0	1	0	0	copy fasta	PGAM1	chr10	97421191	97438444
PGAM2_chr7_44057727_44070567	1/1	t0001	76	399	96	80	165	16	40	copy fasta	PGAM2	chr7	44057727	44070567
PGAM2_chr7_44057727_44070567	0/0	t0002	76	1	0	0	1	0	0	copy fasta	PGAM2	chr7	44057727	44070567
PGAM4_chrX_77962949_77974638	1/1	t0001	926	312	72	64	133	9	32	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	t0002	926	2	0	0	2	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	t0003	926	2	0	0	2	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	t0004	925	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	t0005	926	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	t0006	925	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM4_chrX_77962949_77974638	0/0	t0007	926	1	0	0	1	0	0	copy fasta	PGAM4	chrX	77962949	77974638
PGAM5_chr12_132705842_132727734	0/0	t0001	1942	99	7	16	70	1	5	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	1/0	t0002	1942	68	7	20	26	2	12	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/1	t0003	1941	67	8	16	24	5	13	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0004	1941	22	0	7	12	1	2	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0005	1941	20	19	1	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0006	1938	19	2	5	1	6	5	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0007	1938	18	11	6	0	1	0	copy fasta	PGAM5	chr12	132705842	132727734