Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATF6_chr1_161761320_161969070	0/0	t0010	5459	4	1	0	3	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0011	5456	4	4	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0012	5452	3	1	1	0	1	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0013	5459	3	0	1	1	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0014	5459	3	0	0	1	0	2	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0015	5456	2	2	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0016	5451	2	0	0	2	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0017	5456	2	0	1	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0018	5452	2	1	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/1	t0019	5451	2	0	0	0	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0020	5457	2	2	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0021	5457	2	2	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0022	5458	2	0	0	2	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0023	5456	2	2	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0024	5456	2	2	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0025	5457	2	0	0	1	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0026	5457	2	2	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0027	5457	2	2	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0028	5456	2	2	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0029	5451	2	0	0	2	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0030	5456	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0031	5456	1	0	0	0	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0032	5452	1	0	0	0	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0033	5452	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0034	5451	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0035	5452	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0036	5451	1	0	0	0	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0037	5450	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0038	5451	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0039	5451	1	0	0	0	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0040	5451	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0041	5451	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0042	5451	1	0	0	0	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0043	5452	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0044	5451	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0045	5450	1	0	0	0	1	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0046	5451	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0047	5451	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0048	5458	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0049	5458	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0050	5457	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0051	5458	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0052	5458	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0053	5456	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0054	5457	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0055	5458	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0056	5457	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0057	5457	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0058	5458	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0059	5456	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070