JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGAM5_chr12_132705842_132727734	0/0	t0008	1943	11	6	2	2	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0009	1939	10	8	2	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0010	1938	8	8	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0011	1942	4	0	0	4	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0012	1942	4	2	0	0	0	2	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0013	1942	3	0	1	1	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0014	1938	2	2	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0015	1939	2	2	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0016	1938	2	0	0	0	0	2	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0017	1942	2	0	0	2	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0018	1942	2	0	1	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0019	1938	1	1	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0020	1939	1	0	1	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0021	1939	1	0	0	0	1	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0022	1938	1	1	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0023	1942	1	0	1	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0024	1942	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0025	1943	1	1	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0026	1942	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0027	1941	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0028	1943	1	0	1	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0029	1942	1	0	0	0	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0030	1941	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0031	1941	1	0	1	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0032	1942	1	0	0	0	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0033	1930	1	0	1	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0034	1939	1	0	0	0	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0035	1943	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0036	1942	1	1	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0037	1942	1	0	0	0	1	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0038	1942	1	0	0	0	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0039	1943	1	0	1	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0040	1942	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0041	1940	1	1	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0042	1940	1	1	0	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0043	1941	1	0	1	0	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0044	1943	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0045	1942	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0046	1942	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0047	1940	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0048	1940	1	0	0	1	0	0	copy fasta	PGAM5	chr12	132705842	132727734
PGAM5_chr12_132705842_132727734	0/0	t0049	1942	1	0	0	0	0	1	copy fasta	PGAM5	chr12	132705842	132727734
PGAP1_chr2_196828004_196931707	0/0	t0001	8322	56	16	12	18	3	7	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0002	8325	43	15	7	14	0	7	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0003	8321	20	6	3	2	2	7	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	1/0	t0004	8322	9	8	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0005	8321	6	6	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0006	8322	5	0	4	0	0	1	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0007	8321	4	4	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0008	8321	3	3	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707