JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGAP1_chr2_196828004_196931707	0/0	t0009	8321	3	2	1	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0010	8322	3	0	1	2	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0011	8325	2	0	2	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0012	8321	2	2	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0013	8321	2	2	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0014	8322	2	2	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0015	8322	2	2	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0016	8320	2	0	2	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0017	8321	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/1	t0018	8325	1	0	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0019	8321	1	0	0	1	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0020	8321	1	0	0	1	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0021	8322	1	0	0	1	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0022	8321	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0023	8321	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0024	8321	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0025	8321	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0026	8321	1	0	0	0	0	1	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0027	8321	1	0	0	0	0	1	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0028	8321	1	0	0	0	1	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0029	8322	1	0	1	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0030	8322	1	0	0	0	0	1	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0031	8322	1	0	1	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0032	8322	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0033	8322	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0034	8322	1	0	0	0	0	1	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0035	8322	1	0	0	0	0	1	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0036	8322	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0037	8322	1	0	0	0	0	1	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0038	8322	1	0	0	1	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0039	8322	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP1_chr2_196828004_196931707	0/0	t0040	8321	1	1	0	0	0	0	copy fasta	PGAP1	chr2	196828004	196931707
PGAP2_chr11_3803560_3831371	0/0	t0001	1017	109	12	26	52	8	11	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	1/0	t0002	1016	74	3	10	50	3	7	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0003	1013	61	17	15	25	0	4	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0004	1017	24	1	4	17	0	2	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0005	1017	22	0	2	16	2	2	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0006	1017	14	12	2	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0007	1016	13	3	1	7	1	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/1	t0008	1016	13	2	3	2	1	4	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0009	1017	11	0	7	0	1	3	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0010	1014	9	8	1	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0011	1013	8	6	1	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0012	1013	7	6	1	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0013	1013	7	5	1	0	0	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0014	1016	6	0	1	1	0	4	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0015	1013	6	6	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0016	1018	5	4	1	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0017	1018	4	1	0	2	0	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0018	1017	2	0	0	2	0	0	copy fasta	PGAP2	chr11	3803560	3831371