JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGAP2_chr11_3803560_3831371	0/0	t0019	1014	2	0	0	1	0	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0020	1018	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0021	1018	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0022	1017	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0023	1017	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0024	1017	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0025	1017	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0026	1017	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0027	1017	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0028	1017	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0029	1016	1	0	0	0	0	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0030	1016	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0031	1016	1	0	0	0	0	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0032	1016	1	0	0	0	0	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0033	1014	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0034	1014	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0035	1014	1	0	0	1	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0036	1013	1	0	0	0	0	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0037	1017	1	1	0	0	0	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0038	1018	1	0	0	0	1	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0039	1017	1	0	0	0	0	1	copy fasta	PGAP2	chr11	3803560	3831371
PGAP2_chr11_3803560_3831371	0/0	t0040	1016	1	0	0	0	1	0	copy fasta	PGAP2	chr11	3803560	3831371
PGAP3_chr17_39666122_39693057	0/0	t0001	1725	179	43	38	74	8	16	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	1/1	t0002	1725	147	31	28	65	5	16	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0003	1725	12	1	8	0	1	2	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0004	1725	10	10	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0005	1725	6	5	0	0	0	1	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0006	1725	5	0	0	5	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0007	1725	3	0	0	3	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0008	1725	3	2	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0009	1725	2	0	0	2	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0010	1725	2	2	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0011	1725	1	0	0	1	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0012	1725	1	1	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0013	1725	1	0	0	0	0	1	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0014	1725	1	1	0	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0015	1725	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0016	1725	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP3_chr17_39666122_39693057	0/0	t0017	1725	1	0	1	0	0	0	copy fasta	PGAP3	chr17	39666122	39693057
PGAP4_chr9_101468170_101492173	0/0	t0001	3015	108	7	22	71	0	8	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0002	3014	92	1	4	73	0	14	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0003	3015	66	26	9	26	2	3	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	1/0	t0004	3014	53	5	22	12	6	7	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/1	t0005	3015	12	0	9	1	0	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0006	3016	10	2	2	3	2	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0007	3015	10	10	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0008	3015	9	0	3	2	2	2	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0009	3014	7	6	1	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0010	3015	7	6	1	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0011	3015	7	0	0	5	0	2	copy fasta	PGAP4	chr9	101468170	101492173