JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGAP4_chr9_101468170_101492173	0/0	t0012	3014	7	0	0	5	0	2	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0013	3014	6	6	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0014	3015	5	0	4	0	1	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0015	3015	5	0	0	5	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0016	3013	5	5	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0017	3015	4	0	0	4	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0018	3013	4	0	1	2	0	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0019	3015	3	1	2	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0020	3015	3	0	2	0	0	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0021	3013	2	0	2	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0022	3015	2	2	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0023	3017	2	2	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0024	3013	2	0	0	2	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0025	3015	2	0	1	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0026	3015	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0027	3013	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0028	3015	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0029	3015	1	0	1	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0030	3016	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0031	3015	1	0	0	0	0	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0032	3015	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0033	3015	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0034	3014	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0035	3014	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0036	3014	1	0	0	0	1	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0037	3016	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0038	3014	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0039	3017	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0040	3017	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0041	3016	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0042	3015	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0043	3015	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0044	3014	1	0	0	0	0	1	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0045	3014	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0046	3014	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0047	3013	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0048	3014	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0049	3015	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0050	3014	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0051	3014	1	1	0	0	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP4_chr9_101468170_101492173	0/0	t0052	3015	1	0	0	1	0	0	copy fasta	PGAP4	chr9	101468170	101492173
PGAP6_chr16_365788_386978	0/0	t0001	1342	144	33	25	51	8	27	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	1/1	t0002	1357	142	17	33	74	4	12	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0003	1342	18	7	6	1	1	3	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0004	1357	16	2	1	4	2	7	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0005	1356	10	10	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0006	1357	8	7	1	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0007	1341	7	6	1	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0008	1342	6	2	2	2	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0009	1342	4	4	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978