JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGAP6_chr16_365788_386978	0/0	t0010	1359	3	0	0	3	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0011	1357	2	0	2	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0012	1356	2	2	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0013	1357	2	0	2	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0014	1342	2	2	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0015	1357	1	0	0	0	0	1	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0016	1357	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0017	1357	1	1	0	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0018	1342	1	0	0	0	1	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0019	1342	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0020	1342	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0021	1342	1	0	1	0	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0022	1345	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0023	1357	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGAP6_chr16_365788_386978	0/0	t0024	1357	1	0	0	1	0	0	copy fasta	PGAP6	chr16	365788	386978
PGBD1_chr6_28276572_28307549	1/0	t0001	651	234	31	46	125	8	23	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/1	t0002	651	80	26	13	26	5	9	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0003	651	49	12	8	26	0	3	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0004	651	21	5	1	12	1	2	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0005	626	7	6	1	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0006	651	5	5	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0007	651	5	5	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0008	651	2	0	1	0	0	1	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0009	651	2	0	0	0	0	2	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0010	651	1	1	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0011	651	1	1	0	0	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD1_chr6_28276572_28307549	0/0	t0012	651	1	0	0	1	0	0	copy fasta	PGBD1	chr6	28276572	28307549
PGBD2_chr1_248901235_248924146	1/0	t0001	939	377	84	64	175	13	40	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/1	t0002	939	23	0	1	19	1	1	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	t0003	939	8	8	0	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	t0004	939	6	6	0	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	t0005	939	2	0	0	2	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	t0006	939	2	0	0	2	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	t0007	939	1	0	0	0	0	1	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	t0008	939	1	1	0	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	t0009	939	1	0	1	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD2_chr1_248901235_248924146	0/0	t0010	939	1	1	0	0	0	0	copy fasta	PGBD2	chr1	248901235	248924146
PGBD4_chr15_34097083_34113686	0/1	t0001	4865	152	5	48	67	10	21	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0002	4848	65	18	7	28	0	12	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0003	4842	61	0	3	52	1	5	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0004	4842	12	10	1	0	1	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0005	4839	8	7	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0006	4839	8	8	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0007	4844	7	7	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0008	4847	6	6	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0009	4847	6	1	1	4	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0010	4865	5	0	0	5	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0011	4867	5	0	0	5	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	1/0	t0012	4847	4	3	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0013	4842	3	2	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686