JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGBD4_chr15_34097083_34113686	0/0	t0014	4850	3	0	0	3	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0015	4868	3	0	1	2	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0016	4842	3	1	1	0	0	1	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0017	4842	3	3	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0018	4865	2	0	0	2	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0019	4865	2	2	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0020	4844	2	2	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0021	4848	2	2	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0022	4865	2	0	2	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0023	4848	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0024	4865	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0025	4843	1	0	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0026	4842	1	0	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0027	4842	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0028	4842	1	0	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0029	4842	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0030	4849	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0031	4845	1	0	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0032	4839	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0033	4839	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0034	4846	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0035	4847	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0036	4846	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0037	4845	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0038	4848	1	0	0	0	0	1	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0039	4847	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0040	4845	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0041	4867	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0042	4847	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0043	5173	1	0	0	0	0	1	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0044	4866	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0045	4866	1	0	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0046	4865	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0047	4865	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0048	4865	1	0	0	1	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0049	4844	1	0	0	0	0	1	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0050	4848	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0051	4850	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0052	4847	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0053	4844	1	0	1	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0054	4844	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0055	4865	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0056	4844	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0057	4844	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD4_chr15_34097083_34113686	0/0	t0058	4846	1	1	0	0	0	0	copy fasta	PGBD4	chr15	34097083	34113686
PGBD5_chr1_230309490_230431332	0/0	t0001	9332	24	0	2	16	1	5	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0002	9305	23	0	5	9	3	6	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0003	9332	11	0	6	5	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0004	9331	7	0	2	1	0	4	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0005	9305	7	0	0	5	0	2	copy fasta	PGBD5	chr1	230309490	230431332