JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGBD5_chr1_230309490_230431332	0/0	t0006	9228	5	5	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0007	9332	5	0	0	5	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0008	9341	5	5	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0009	9335	5	5	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0010	9300	5	5	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0011	9306	4	0	3	0	1	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0012	9305	4	0	1	1	0	2	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0013	9303	4	0	2	1	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0014	9354	4	0	4	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0015	9333	4	0	0	2	1	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0016	9289	4	0	3	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0017	9533	3	3	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0018	9336	3	2	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0019	9338	3	2	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0020	9335	3	0	2	0	1	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0021	9335	3	0	0	0	0	3	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0022	9341	3	3	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0023	9333	3	1	0	2	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0024	9293	3	3	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0025	9305	3	0	2	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0026	9335	3	0	1	2	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0027	9333	3	0	0	3	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0028	9234	2	2	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0029	9335	2	0	0	2	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0030	9229	2	2	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0031	9303	2	0	0	2	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0032	9301	2	0	0	1	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0033	9334	2	0	0	1	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0034	9356	2	2	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0035	9289	2	0	2	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0036	9337	2	2	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0037	9331	2	0	0	2	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0038	9330	2	1	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0039	9248	2	0	1	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0040	9293	2	2	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0041	9305	2	0	0	2	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0042	9233	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0043	9341	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0044	9408	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0045	9330	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	1/0	t0046	9340	1	0	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0047	9289	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0048	9574	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0049	9532	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0050	9332	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0051	9336	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0052	9334	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0053	9339	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0054	9332	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0055	9304	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332