JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGBD5_chr1_230309490_230431332	0/0	t0056	9227	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0057	9337	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0058	9330	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0059	9227	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0060	9341	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0061	9305	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0062	9306	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0063	9384	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0064	9346	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0065	9303	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0066	9302	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0067	9291	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0068	9306	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0069	9305	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0070	9304	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0071	9305	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/1	t0072	9305	1	0	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0073	9345	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0074	9305	1	0	0	0	1	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0075	9303	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0076	9304	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0077	9332	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0078	9305	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0079	9373	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0080	9342	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0081	9336	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0082	9336	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0083	9337	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0084	9336	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0085	9334	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0086	9332	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0087	9340	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0088	9341	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0089	9408	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0090	9299	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0091	9353	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0092	9299	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0093	9332	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0094	9249	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0095	9333	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0096	9332	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0097	9331	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0098	9314	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0099	9314	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0100	9330	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0101	9332	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0102	9332	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0103	9330	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0104	9329	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0105	9332	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332