JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGBD5_chr1_230309490_230431332	0/0	t0106	9299	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0107	9305	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0108	9304	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0109	9330	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0110	9303	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0111	9302	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0112	9357	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0113	9305	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0114	9157	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0115	9156	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0116	9411	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0117	9337	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0118	9299	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0119	9300	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0120	9339	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0121	9341	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0122	9340	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0123	9377	1	1	0	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0124	9332	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0125	9331	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0126	9334	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0127	9334	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0128	9335	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0129	9334	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0130	9333	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0131	9332	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0132	9308	1	0	0	0	0	1	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0133	9306	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0134	9304	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0135	9335	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0136	9306	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0137	9303	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0138	9334	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0139	9304	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0140	9332	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0141	9331	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0142	9331	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0143	9330	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0144	9333	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0145	9304	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0146	9305	1	0	0	1	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGBD5_chr1_230309490_230431332	0/0	t0147	9340	1	0	1	0	0	0	copy fasta	PGBD5	chr1	230309490	230431332
PGC_chr6_41731711_41752397	1/1	t0001	205	457	97	85	208	17	48	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	t0002	205	4	0	1	0	1	2	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	t0003	205	2	2	0	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGC_chr6_41731711_41752397	0/0	t0004	205	1	1	0	0	0	0	copy fasta	PGC	chr6	41731711	41752397
PGD_chr1_10394064_10425511	0/0	t0001	814	145	31	28	68	4	14	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0002	816	137	21	18	75	5	18	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/1	t0003	815	62	32	8	10	3	8	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	1/0	t0004	817	33	5	10	10	2	5	copy fasta	PGD	chr1	10394064	10425511