JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGD_chr1_10394064_10425511	0/0	t0005	816	3	1	2	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0006	814	2	0	0	2	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0007	814	1	0	0	0	0	1	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0008	814	1	0	0	0	0	1	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0009	815	1	0	1	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0010	815	1	0	0	1	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0011	816	1	0	0	1	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0012	818	1	0	0	1	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0013	814	1	1	0	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0014	814	1	1	0	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0015	804	1	0	0	1	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0016	816	1	0	1	0	0	0	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0017	816	1	0	0	0	0	1	copy fasta	PGD	chr1	10394064	10425511
PGD_chr1_10394064_10425511	0/0	t0018	817	1	0	0	1	0	0	copy fasta	PGD	chr1	10394064	10425511
PGF_chr14_74936834_74960597	0/1	t0001	1229	259	25	53	146	14	20	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0002	1228	57	1	11	28	2	15	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0003	1228	33	26	4	0	0	3	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0004	1228	17	14	2	0	0	1	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0005	1228	8	8	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0006	1228	7	7	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0007	1228	6	6	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	1/0	t0008	1228	4	1	1	0	0	1	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0009	1228	2	0	1	1	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0010	1228	2	2	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0011	1229	2	2	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0012	1229	1	1	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0013	1228	1	0	0	1	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0014	1228	1	1	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0015	1229	1	1	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0016	1229	1	0	0	1	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0017	1229	1	0	0	1	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0018	1228	1	0	1	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0019	1229	1	1	0	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGF_chr14_74936834_74960597	0/0	t0020	1229	1	0	1	0	0	0	copy fasta	PGF	chr14	74936834	74960597
PGGHG_chr11_284126_301107	1/0	t0001	1486	166	28	22	101	4	10	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0002	1486	78	30	3	28	0	17	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0003	1486	76	0	10	62	0	4	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0004	1486	30	2	20	0	6	2	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0005	1486	27	3	11	0	6	7	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0006	1486	13	13	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0007	1486	12	0	0	12	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0008	1486	6	0	2	2	0	2	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0009	1486	4	0	3	0	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0010	1486	3	0	3	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0011	1486	3	2	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0012	1486	2	2	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0013	1486	2	2	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0014	1486	2	2	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0015	1486	2	1	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0016	1486	2	2	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107