Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATF6_chr1_161761320_161969070	0/0	t0060	5457	1	0	0	1	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0061	5459	1	0	0	0	0	1	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0062	5456	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0063	5457	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0064	5456	1	1	0	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF6_chr1_161761320_161969070	0/0	t0065	5456	1	0	1	0	0	0	copy fasta	ATF6	chr1	161761320	161969070
ATF7IP2_chr16_10381061_10488638	0/1	t0001	1693	100	19	24	43	2	11	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0002	1693	77	15	3	55	0	4	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0003	1692	61	23	19	13	0	6	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	1/0	t0004	1693	55	1	15	25	4	9	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0005	1691	26	0	6	15	1	4	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0006	1696	9	9	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0007	1691	9	0	0	9	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0008	1693	8	2	0	6	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0009	1693	5	5	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0010	1693	5	4	1	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0011	1693	4	4	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0012	1692	3	0	0	0	3	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0013	1693	2	1	0	0	0	1	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0014	1693	2	0	0	0	0	2	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0015	1692	1	0	0	0	1	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0016	1692	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0017	1692	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0018	1692	1	1	0	0	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0019	1692	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0020	1693	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0021	1693	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0022	1693	1	0	0	0	0	1	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0023	1694	1	0	0	1	0	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP2_chr16_10381061_10488638	0/0	t0024	1693	1	0	0	0	1	0	copy fasta	ATF7IP2	chr16	10381061	10488638
ATF7IP_chr12_14360682_14507930	0/1	t0001	5012	78	1	21	42	6	7	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0002	5006	60	4	6	32	4	14	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0003	5006	48	3	14	24	3	4	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0004	5012	19	5	2	10	0	2	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0005	5012	17	10	6	0	1	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0006	5007	11	11	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0007	5013	11	11	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0008	5013	11	0	0	8	0	3	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0009	5012	10	9	1	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0010	5012	9	0	2	3	0	4	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0011	5012	8	6	2	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0012	5012	7	7	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0013	5011	6	0	4	2	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0014	5011	5	5	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0015	5011	5	5	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0016	5007	3	3	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0017	5006	3	0	0	3	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	1/0	t0018	5011	3	2	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0019	5011	3	0	0	3	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	t0020	5006	2	2	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930