JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGGHG_chr11_284126_301107	0/0	t0017	1486	2	0	0	2	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0018	1486	2	0	1	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0019	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0020	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0021	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0022	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0023	1486	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0024	1486	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/1	t0025	1486	1	0	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0026	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0027	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0028	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0029	1486	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0030	1486	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0031	1486	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0032	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0033	1486	1	0	0	1	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0034	1486	1	0	0	0	0	1	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0035	1486	1	0	1	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGHG_chr11_284126_301107	0/0	t0036	1486	1	1	0	0	0	0	copy fasta	PGGHG	chr11	284126	301107
PGGT1B_chr5_115199012_115267877	0/0	t0001	8409	54	5	8	36	2	3	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	1/0	t0002	8417	24	0	7	11	2	3	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0003	8422	18	0	7	7	0	4	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0004	8435	12	0	0	11	1	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0005	8408	11	0	0	11	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0006	8419	11	1	0	7	0	3	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0007	8437	9	2	0	5	1	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0008	8409	9	0	0	9	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0009	8421	9	0	3	2	3	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0010	8439	8	0	4	2	0	2	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0011	8433	6	0	0	5	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0012	8441	5	0	2	3	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0013	8424	5	1	4	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0014	8433	4	4	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0015	8436	4	0	1	2	1	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0016	8418	4	0	3	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0017	8424	3	3	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0018	8431	3	0	2	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0019	8447	3	0	1	2	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0020	8443	3	0	1	1	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0021	8433	3	0	1	0	1	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0022	8429	3	0	1	1	1	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/1	t0023	8432	3	0	1	0	1	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0024	8410	3	1	0	1	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0025	8433	3	2	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0026	8438	3	2	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0027	8436	3	2	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0028	8434	3	0	1	0	0	2	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0029	8430	3	1	0	0	0	2	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0030	8420	3	0	0	3	0	0	copy fasta	PGGT1B	chr5	115199012	115267877