JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PGGT1B_chr5_115199012_115267877	0/0	t0031	8423	3	0	0	3	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0032	8422	3	1	0	0	0	2	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0033	8423	3	0	1	2	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0034	8433	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0035	8431	2	1	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0036	8409	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0037	8431	2	0	0	2	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0038	8429	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0039	8425	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0040	8437	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0041	8410	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0042	8428	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0043	8409	2	0	0	0	0	2	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0044	8438	2	0	1	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0045	8433	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0046	8437	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0047	8418	2	0	0	2	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0048	8434	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0049	8442	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0050	8432	2	0	1	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0051	8411	2	2	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0052	8421	2	0	0	2	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0053	8426	2	0	1	0	1	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0054	8434	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0055	8412	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0056	8412	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0057	8437	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0058	8431	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0059	8431	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0060	8448	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0061	8438	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0062	8424	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0063	8428	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0064	8429	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0065	8439	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0066	8439	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0067	8433	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0068	8445	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0069	8441	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0070	8433	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0071	8449	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0072	8445	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0073	8443	1	0	1	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0074	8441	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0075	8439	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0076	8437	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0077	8435	1	0	0	0	0	1	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0078	8431	1	1	0	0	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0079	8425	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877
PGGT1B_chr5_115199012_115267877	0/0	t0080	8419	1	0	0	1	0	0	copy fasta	PGGT1B	chr5	115199012	115267877